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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141969 (56 seq.)
>W1710785385
LJHU01000111
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
793
710
-
Tyr
GTA
[ENA]
¡û
>W1710863886
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
271508
271425
-
Tyr
GTA
[ENA]
¡û
>W1710865557
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
48973
49056
+
Tyr
GTA
[ENA]
¡û
>W1710877324
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
392
309
-
Tyr
GTA
[ENA]
¡û
>W131221568
AUAO01000003
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
361868
361785
-
Tyr
GTA
[ENA]
¡û
>C171094866
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2544468
2544385
-
Tyr
GTA
-
¡û
>W131052440
AMYY01000037
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
27586
27669
+
Tyr
GTA
[ENA]
¡û
>W131160346
AQWM01000023
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AQWM]
61668
61751
+
Tyr
GTA
[ENA]
¡û
>WENV180016582
FSVH01000337
[FSVH] metagenome; soil
98
15
-
Tyr
GTA
[ENA]
¢þ
>WENV180020817
FTDB01002303
[FTDB] metagenome; soil
496
413
-
Tyr
GTA
[ENA]
¢þ
>WENV180027905
FTIZ01238336
[FTIZ] metagenome; soil
326
409
+
Tyr
GTA
[ENA]
¢þ
>WENV180028118
FTIZ01751883
[FTIZ] metagenome; soil
11330
11413
+
Tyr
GTA
[ENA]
¢þ
>WENV180028794
FTJH01000605
[FTJH] metagenome; soil
1377
1460
+
Tyr
GTA
[ENA]
¢þ
>WENV180029303
FTJI01492636
[FTJI] metagenome; soil
411
328
-
Tyr
GTA
[ENA]
¢þ
>WENV180034831
FTKR01523946
[FTKR] metagenome; soil
411
328
-
Tyr
GTA
[ENA]
¢þ
>WENV180693955
OCZS011790953
[OCZS] soil metagenome; soil
201
118
-
Tyr
GTA
[ENA]
¢þ
>WENV181170452
OEIV010047907
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
960
1043
+
Tyr
GTA
[ENA]
¢þ
>WENV181192190
OEPS010460265
[OEPS] soil metagenome; soil
39
122
+
Tyr
GTA
[ENA]
¢þ
>WENV181223248
OFDC01004064
[OFDC] hot springs metagenome; Water
343
260
-
Tyr
GTA
[ENA]
¢þ
>WENV181227159
OFDN01002528
[OFDN] hot springs metagenome; Water
343
260
-
Tyr
GTA
[ENA]
¢þ
>WENV181385065
OFRI01030595
[OFRI] wastewater metagenome; Exp Tend VB 90WW
650
733
+
Tyr
GTA
[ENA]
¢þ
>W141136695
AWGB01000034
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AWGB]
61388
61471
+
Tyr
GTA
[ENA]
¡û
>W141136748
AWGC01000056
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
1294
1377
+
Tyr
GTA
[ENA]
¡û
>W141136783
AWGD01000023
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
58071
57988
-
Tyr
GTA
[ENA]
¡û
>W141136826
AWGE01000011
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
95385
95468
+
Tyr
GTA
[ENA]
¡û
>W141136861
AWGF01000013
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
173024
173107
+
Tyr
GTA
[ENA]
¡û
>WENV183697023
OUNJ010000699
[OUNJ] metagenome; soil
6431
6514
+
Tyr
GTA
[ENA]
¢þ
>WENV183697314
OUNJ010342195
[OUNJ] metagenome; soil
370
287
-
Tyr
GTA
[ENA]
¢þ
>WENV183727717
PJTP01000098
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
76641
76724
+
Tyr
GTA
[ENA]
¢þ
>WENV183728304
PJTQ01000012
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
475390
475473
+
Tyr
GTA
[ENA]
¢þ
>WENV183739774
PJUF01000008
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
475390
475473
+
Tyr
GTA
[ENA]
¢þ
>WENV170594292
FUFK011265312
[FUFK] metagenome; unknown
316
233
-
Tyr
GTA
[ENA]
¢þ
>WENV170594363
FUFK011288383
[FUFK] metagenome; unknown
473
390
-
Tyr
GTA
[ENA]
¢þ
>WENV170713883
LNFM01045514
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2775
2858
+
Tyr
GTA
[ENA]
¢þ
>WENV170834491
MDSZ01097914
[MDSZ] marine metagenome; seawater
883
800
-
Tyr
GTA
[ENA]
¢þ
>C191166121
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2297049
2296966
-
Tyr
GTA
-
¡û
>C191189133
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2241707
2241624
-
Tyr
GTA
-
¡û
>W141731246
JNIX01000016
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
1287
1204
-
Tyr
GTA
[ENA]
¡û
>W1911738134
QUOQ01000002
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
640570
640653
+
Tyr
GTA
[ENA]
¡û
>W1911760352
QWTZ01000006
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
533
450
-
Tyr
GTA
[ENA]
¡û
>W10109867
ADBM01000021
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
49037
49120
+
Tyr
GTA
[ENA]
¡û
>C10102193
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1558730
1558813
+
Tyr
GTA
[Ensembl]
¡û
>W11112304
ADBM01000021
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
49037
49120
+
Tyr
GTA
[ENA]
¡û
>W11123407
ADUH01000293
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
52307
52390
+
Tyr
GTA
[ENA]
¡û
>W1511489485
JWSY01000026
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
323
240
-
Tyr
GTA
[ENA]
¡û
>W1511547873
JZRG01000009
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
327
244
-
Tyr
GTA
[ENA]
¡û
>W1511596059
LBNT01000008
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
62124
62207
+
Tyr
GTA
[ENA]
¡û
>C161047055
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2860064
2859981
-
Tyr
GTA
[Ensembl]
¡û
>W1610649191
LJHU01000111
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
793
710
-
Tyr
GTA
[ENA]
¡û
>W1610726232
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
271508
271425
-
Tyr
GTA
[ENA]
¡û
>W1610727903
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
48973
49056
+
Tyr
GTA
[ENA]
¡û
>W1610739670
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
392
309
-
Tyr
GTA
[ENA]
¡û
>W1710084611
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
594990
594907
-
Tyr
GTA
[ENA]
¡û
>W1710505476
FMTS01000003
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
434689
434772
+
Tyr
GTA
[ENA]
¡û
>W1710527011
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
230386
230469
+
Tyr
GTA
[ENA]
¡û
>W1710576205
FOZV01000010
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
378
295
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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