This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.142249 (8 seq.)
>C181199863
CP031368
Gammaproteobacteria
Klebsiella pneumoniae KpvST101_OXA-48 [CP031368]
4839642
4839565
-
Val
TAC
-
¡û
>C181199864
CP031368
Gammaproteobacteria
Klebsiella pneumoniae KpvST101_OXA-48 [CP031368]
4839518
4839441
-
Val
TAC
-
¡û
>C191199288
LR134190
Gammaproteobacteria
Salmonella enterica subsp. enterica NCTC6754 [LR134190]
2518113
2518036
-
Val
TAC
-
¡û
>C191199289
LR134190
Gammaproteobacteria
Salmonella enterica subsp. enterica NCTC6754 [LR134190]
2517994
2517917
-
Val
TAC
-
¡û
>SRA1004941
SRR006906.190161
metagenomic water samples (SRP000427)
181
258
+
Val
TAC
[SRA]
>C201252485
CP051749
Gammaproteobacteria
Escherichia coli SCU-486 [CP051749]
480536
480613
+
Val
TAC
-
¡û
>C211206231
CP065419
Gammaproteobacteria
Salmonella enterica LHICA_E1 [CP065419]
1527086
1527009
-
Val
TAC
-
¡û
>C231436116
CP101388
Gammaproteobacteria
Salmonella enterica SC2017167 [CP101388]
1525894
1525817
-
Cys
ACA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK