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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.143090 (49 seq.)
>WENV181235580
OFEY01001011
[OFEY] mouse gut metagenome; faeces
13681
13758
+
Cys
GCA
[ENA]
¡û
>WENV181236331
OFEZ01000292
[OFEZ] mouse gut metagenome; faeces
23606
23529
-
Cys
GCA
[ENA]
¡û
>WENV181237525
OFFB01000414
[OFFB] mouse gut metagenome; faeces
13681
13758
+
Cys
GCA
[ENA]
¡û
>WENV181238906
OFFC01009057
[OFFC] mouse gut metagenome; faeces
76
153
+
Cys
GCA
[ENA]
¡û
>WENV181239501
OFFD01001216
[OFFD] mouse gut metagenome; faeces
13681
13758
+
Cys
GCA
[ENA]
¡û
>WENV181240542
OFFE01002064
[OFFE] mouse gut metagenome; faeces
6425
6502
+
Cys
GCA
[ENA]
¡û
>WENV181241504
OFFF01001592
[OFFF] mouse gut metagenome; faeces
540
463
-
Cys
GCA
[ENA]
¡û
>WENV181243618
OFFH01000294
[OFFH] mouse gut metagenome; faeces
13681
13758
+
Cys
GCA
[ENA]
¡û
>WENV181244740
OFFI01000804
[OFFI] mouse gut metagenome; faeces
13365
13442
+
Cys
GCA
[ENA]
¡û
>WENV181245384
OFFJ01000053
[OFFJ] mouse gut metagenome; faeces
26170
26093
-
Cys
GCA
[ENA]
¡û
>WENV181246865
OFFK01001534
[OFFK] mouse gut metagenome; faeces
13365
13442
+
Cys
GCA
[ENA]
¡û
>WENV181248267
OFFL01001501
[OFFL] mouse gut metagenome; faeces
13681
13758
+
Cys
GCA
[ENA]
¡û
>WENV181249023
OFFM01000409
[OFFM] mouse gut metagenome; faeces
13663
13740
+
Cys
GCA
[ENA]
¡û
>WENV181250168
OFFN01001059
[OFFN] mouse gut metagenome; faeces
13663
13740
+
Cys
GCA
[ENA]
¡û
>WENV181251196
OFFO01001370
[OFFO] mouse gut metagenome; faeces
7031
7108
+
Cys
GCA
[ENA]
¡û
>WENV181252527
OFFP01036242
[OFFP] mouse gut metagenome; faeces
938
1015
+
Cys
GCA
[ENA]
¡û
>WENV181252880
OFFQ01000190
[OFFQ] mouse gut metagenome; faeces
48963
48886
-
Cys
GCA
[ENA]
¡û
>WENV181254029
OFFR01000244
[OFFR] mouse gut metagenome; faeces
13636
13713
+
Cys
GCA
[ENA]
¡û
>WENV181255107
OFFS01000262
[OFFS] mouse gut metagenome; faeces
13681
13758
+
Cys
GCA
[ENA]
¡û
>WENV181256050
OFFT01000155
[OFFT] mouse gut metagenome; faeces
28829
28906
+
Cys
GCA
[ENA]
¡û
>WENV181257479
OFFU01001149
[OFFU] mouse gut metagenome; faeces
6581
6504
-
Cys
GCA
[ENA]
¡û
>WENV181259509
OFFW01000266
[OFFW] mouse gut metagenome; faeces
13636
13713
+
Cys
GCA
[ENA]
¡û
>WENV181260844
OFFX01001591
[OFFX] mouse gut metagenome; faeces
2695
2618
-
Cys
GCA
[ENA]
¡û
>WENV181262276
OFFY01002666
[OFFY] mouse gut metagenome; faeces
11990
12067
+
Cys
GCA
[ENA]
¡û
>WENV181263026
OFFZ01000057
[OFFZ] mouse gut metagenome; faeces
26170
26093
-
Cys
GCA
[ENA]
¡û
>WENV181264272
OFGA01000356
[OFGA] mouse gut metagenome; faeces
13636
13713
+
Cys
GCA
[ENA]
¡û
>WENV181265999
OFGB01007416
[OFGB] mouse gut metagenome; faeces
2699
2622
-
Cys
GCA
[ENA]
¡û
>WENV181266933
OFGC01000459
[OFGC] mouse gut metagenome; faeces
13365
13442
+
Cys
GCA
[ENA]
¡û
>WENV181267970
OFGD01000283
[OFGD] mouse gut metagenome; faeces
33698
33621
-
Cys
GCA
[ENA]
¡û
>WENV181269170
OFGE01000575
[OFGE] mouse gut metagenome; faeces
13365
13442
+
Cys
GCA
[ENA]
¡û
>WENV181271861
OFGG01000496
[OFGG] mouse gut metagenome; faeces
5880
5957
+
Cys
GCA
[ENA]
¡û
>WENV181273089
OFGH01000311
[OFGH] mouse gut metagenome; faeces
33834
33757
-
Cys
GCA
[ENA]
¡û
>WENV181274430
OFGI01000317
[OFGI] mouse gut metagenome; faeces
13681
13758
+
Cys
GCA
[ENA]
¡û
>WENV181275550
OFGJ01005213
[OFGJ] mouse gut metagenome; faeces
277
354
+
Cys
GCA
[ENA]
¡û
>WENV181276230
OFGK01001102
[OFGK] mouse gut metagenome; faeces
2699
2622
-
Cys
GCA
[ENA]
¡û
>WENV181277717
OFGL01018866
[OFGL] mouse gut metagenome; faeces
1374
1451
+
Cys
GCA
[ENA]
¡û
>WENV181278125
OFGM01000231
[OFGM] mouse gut metagenome; faeces
24684
24761
+
Cys
GCA
[ENA]
¡û
>WENV181279373
OFGN01000512
[OFGN] mouse gut metagenome; faeces
13681
13758
+
Cys
GCA
[ENA]
¡û
>WENV181280496
OFGO01000416
[OFGO] mouse gut metagenome; faeces
26513
26436
-
Cys
GCA
[ENA]
¡û
>WENV181281875
OFGP01000924
[OFGP] mouse gut metagenome; faeces
4802
4725
-
Cys
GCA
[ENA]
¡û
>WENV181283285
OFGQ01001875
[OFGQ] mouse gut metagenome; faeces
10227
10304
+
Cys
GCA
[ENA]
¡û
>WENV181284481
OFGR01001508
[OFGR] mouse gut metagenome; faeces
4659
4582
-
Cys
GCA
[ENA]
¡û
>WENV181286987
OFGX01000314
[OFGX] mouse gut metagenome; faeces
13365
13442
+
Cys
GCA
[ENA]
¡û
>WENV181288588
OFGZ01000346
[OFGZ] mouse gut metagenome; faeces
13636
13713
+
Cys
GCA
[ENA]
¡û
>WENV181290768
OFHB01000172
[OFHB] mouse gut metagenome; faeces
33829
33752
-
Cys
GCA
[ENA]
¡û
>WENV181298937
OFHM01000381
[OFHM] mouse gut metagenome; faeces
13365
13442
+
Cys
GCA
[ENA]
¡û
>WENV181300207
OFHN01000391
[OFHN] mouse gut metagenome; faeces
26513
26436
-
Cys
GCA
[ENA]
¡û
>WENV181301557
OFHO01000277
[OFHO] mouse gut metagenome; faeces
34333
34256
-
Cys
GCA
[ENA]
¡û
>WENV181303075
OFHP01001062
[OFHP] mouse gut metagenome; faeces
585
508
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK