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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144564 (11 seq.)
>WENV183663143
ORJL010257979
[ORJL] groundwater metagenome; groundwater
469
392
-
Arg
ACG
[ENA]
¡û
>WENV170128219
CENP01411968
[CENP] marine metagenome genome assembly TARA_030_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
53
130
+
Arg
ACG
[ENA]
¡û
>WENV170359222
CETK01275777
[CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
109
32
-
Arg
ACG
[ENA]
¡û
>WENV170381790
CETW01197256
[CETW] marine metagenome genome assembly TARA_052_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
245
322
+
Arg
ACG
[ENA]
¡û
>WENV170649011
JRHI01004967
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
4303
4380
+
Arg
ACG
[ENA]
¡û
>WENV170832139
MDSZ01056804
[MDSZ] marine metagenome; seawater
3753
3676
-
Arg
ACG
[ENA]
¡û
>WENV170865270
MDTB01117114
[MDTB] marine metagenome; seawater
1452
1529
+
Arg
ACG
[ENA]
¡û
>WENV170895891
MDTD01086734
[MDTD] marine metagenome; seawater
1475
1552
+
Arg
ACG
[ENA]
¡û
>WENV170938402
MDTG01308435
[MDTG] marine metagenome; seawater
1477
1554
+
Arg
ACG
[ENA]
¡û
>WENV170940211
MDTG01339510
[MDTG] marine metagenome; seawater
5295
5218
-
Arg
ACG
[ENA]
¡û
>W2010315704
CACIOO010000002
Hydrogenophilia
Hydrogenophilales bacterium [CACIOO]
12749
12826
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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