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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144599 (8 seq.)
>W1710799549
LJUU01000094
Unclassified
Omnitrophica WOR_2 bacterium SM23_72 [LJUU]
4401
4326
-
Pro
TGG
[ENA]
¡û
>WENV183664975
ORJL010428521
[ORJL] groundwater metagenome; groundwater
7172
7098
-
Pro
CGG
[ENA]
¡û
>WENV183677818
ORJL011802027
[ORJL] groundwater metagenome; groundwater
649
572
-
Pro
CGG
[ENA]
¡û
>W1910732298
MHGN01000038
Unclassified
Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_45_21 [MHGN]
7097
7174
+
Pro
CGG
[ENA]
¡û
>W1910732736
MHHD01000079
Unclassified
Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_51_8 [MHHD]
18723
18800
+
Pro
CGG
[ENA]
¡û
>W2010865728
MHGN01000038
Unclassified
Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_45_21 [MHGN]
7097
7174
+
Pro
CGG
[ENA]
¡û
>W2010866166
MHHD01000079
Unclassified
Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_51_8 [MHHD]
18723
18800
+
Pro
CGG
[ENA]
¡û
>W1610663506
LJUU01000094
Unclassified
Omnitrophica WOR_2 bacterium SM23_72 [LJUU]
4401
4326
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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