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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144621 (16 seq.)
>WENV180242321
OBDI01183361
[OBDI] metagenome; diffuse fluid
143
68
-
Asp
GTC
[ENA]
¡û
>WENV180251390
OBEQ010362105
[OBEQ] groundwater metagenome; groundwater
1148
1223
+
Asp
GTC
[ENA]
¡û
>WENV180254300
OBEQ010618755
[OBEQ] groundwater metagenome; groundwater
32391
32315
-
Asp
GTC
[ENA]
¡û
>WENV180254489
OBEQ010634625
[OBEQ] groundwater metagenome; groundwater
664
741
+
Asp
GTC
[ENA]
¡û
>WENV180256862
OBEQ010859025
[OBEQ] groundwater metagenome; groundwater
1
77
+
Asp
GTC
[ENA]
¡û
>WENV180263434
OBEQ011474982
[OBEQ] groundwater metagenome; groundwater
1368
1445
+
Asp
GTC
[ENA]
¡û
>WENV180263779
OBEQ011505358
[OBEQ] groundwater metagenome; groundwater
183
106
-
Asp
GTC
[ENA]
¡û
>WENV183665749
ORJL010488772
[ORJL] groundwater metagenome; groundwater
9495
9418
-
Asp
GTC
[ENA]
¡û
>WENV183679218
ORMF010029861
[ORMF] groundwater metagenome; groundwater
10416
10493
+
Asp
GTC
[ENA]
¡û
>WENV183681330
ORMF010291064
[ORMF] groundwater metagenome; groundwater
545
469
-
Asp
GTC
[ENA]
¡û
>WENV183681824
ORMF010363347
[ORMF] groundwater metagenome; groundwater
1440
1363
-
Asp
GTC
[ENA]
¡û
>WENV183683198
ORMF010547237
[ORMF] groundwater metagenome; groundwater
232
309
+
Asp
GTC
[ENA]
¡û
>WENV183687523
ORMF011158666
[ORMF] groundwater metagenome; groundwater
634
711
+
Asp
GTC
[ENA]
¡û
>WENV183690234
ORMF011564752
[ORMF] groundwater metagenome; groundwater
5919
5842
-
Asp
GTC
[ENA]
¡û
>WENV183691191
ORMF011719887
[ORMF] groundwater metagenome; groundwater
642
719
+
Asp
GTC
[ENA]
¡û
>WENV183695822
ORMF012454110
[ORMF] groundwater metagenome; groundwater
847
924
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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