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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144657 (7 seq.)
>WENV180253034
OBEQ010500523
[OBEQ] groundwater metagenome; groundwater
547
470
-
Pro
CGG
[ENA]
¡û
>WENV180263522
OBEQ011483893
[OBEQ] groundwater metagenome; groundwater
2825
2899
+
Pro
CGG
[ENA]
¡û
>WENV181171818
OEIV010368060
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
81
4
-
Pro
TGG
[ENA]
¡û
>WENV183667214
ORJL010626624
[ORJL] groundwater metagenome; groundwater
18042
17965
-
Pro
CGG
[ENA]
¡û
>WENV183684774
ORMF010754542
[ORMF] groundwater metagenome; groundwater
394
471
+
Pro
CGG
[ENA]
¡û
>WENV183690515
ORMF011609569
[ORMF] groundwater metagenome; groundwater
18329
18404
+
Pro
CGG
[ENA]
¡û
>WENV183691255
ORMF011729468
[ORMF] groundwater metagenome; groundwater
1
78
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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