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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144672 (6 seq.)
>W1711411549
MGTF01000223
Unclassified
Deltaproteobacteria bacterium RIFOXYD2_FULL_66_9 [MGTF]
606
529
-
Glu
TTC
[ENA]
¡û
>WENV180353964
OBLQ011237726
[OBLQ] soil metagenome; soil
125
202
+
Glu
TTC
[ENA]
¡û
>WENV183668016
ORJL010702944
[ORJL] groundwater metagenome; groundwater
22
99
+
Glu
TTC
[ENA]
¡û
>WENV183673057
ORJL011237439
[ORJL] groundwater metagenome; groundwater
63
140
+
Glu
TTC
[ENA]
¡û
>WENV183673147
ORJL011247641
[ORJL] groundwater metagenome; groundwater
63
140
+
Glu
TTC
[ENA]
¡û
>WENV183675145
ORJL011477371
[ORJL] groundwater metagenome; groundwater
256
179
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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