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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144891 (11 seq.)
>W1711395423
METG01000225
Unclassified
candidate division NC10 bacterium RBG_16_65_8 [METG]
1630
1707
+
Arg
CCG
[ENA]
¡û
>WENV180266170
OBEQ011727567
[OBEQ] groundwater metagenome; groundwater
755
678
-
Arg
CCG
[ENA]
¡û
>WENV180352433
OBLQ010253042
[OBLQ] soil metagenome; soil
436
513
+
Arg
CCG
[ENA]
¡û
>WENV180353148
OBLQ010579095
[OBLQ] soil metagenome; soil
154
231
+
Arg
CCG
[ENA]
¡û
>WENV183678077
ORJL011836332
[ORJL] groundwater metagenome; groundwater
207
284
+
Arg
CCG
[ENA]
¡û
>WENV183695839
ORMF012456241
[ORMF] groundwater metagenome; groundwater
8454
8377
-
Arg
CCG
[ENA]
¡û
>WENV170661496
JXWV01040613
[JXWV] soil metagenome; rice field; organic FYM Plot
389
464
+
Arg
CCG
[ENA]
¡û
>W1910700590
METH01000115
Unclassified
candidate division NC10 bacterium RIFCSPLOWO2_02_FULL_66_22 [METH]
18990
19067
+
Arg
CCG
[ENA]
¡û
>W1910700627
METI01000073
Unclassified
candidate division NC10 bacterium RIFCSPLOWO2_12_FULL_66_18 [METI]
38008
38085
+
Arg
CCG
[ENA]
¡û
>W2010834016
METH01000115
Unclassified
candidate division NC10 bacterium RIFCSPLOWO2_02_FULL_66_22 [METH]
18990
19067
+
Arg
CCG
[ENA]
¡û
>W2010834053
METI01000073
Unclassified
candidate division NC10 bacterium RIFCSPLOWO2_12_FULL_66_18 [METI]
38008
38085
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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