This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144909 (98 seq.)
>W1711183529
LWLC01000011
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
36696
36770
+
Leu
CAA
[ENA]
¡û
>W1711386175
MEEZ01000321
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
5217
5141
-
Leu
CAA
[ENA]
¡û
>W1711386217
MEFA01000314
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
5305
5229
-
Leu
CAA
[ENA]
¡û
>W1711387133
MEGH01000027
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
61935
62011
+
Leu
CAA
[ENA]
¡û
>W1711724922
MTQO01000054
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
937765
937689
-
Leu
CAA
[ENA]
¡û
>W1711724935
MTQP01000056
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
144974
144900
-
Leu
CAA
[ENA]
¡û
>W1711749153
MUMH01000012
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
1595
1519
-
Leu
CAA
[ENA]
¡û
>W1711766525
MUYM01000054
Actinomycetota
Lentzea kentuckyensis [MUYM]
27391
27465
+
Leu
CAA
[ENA]
¡û
>W1711790841
MWIH01000005
Actinomycetota
Saccharomonospora piscinae LRS4.154 [MWIH]
61391
61467
+
Leu
CAA
[ENA]
¡û
>C171050999
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
4790681
4790755
+
Leu
CAA
-
¡û
>W131011099
AICW01000727
Actinomycetota
Saccharomonospora iraqiensis IQ-H1 [AICW]
18430
18506
+
Leu
CAA
[ENA]
¡û
>W131011116
AICX01000205
Actinomycetota
Saccharomonospora halophila 8 [AICX]
2040
2116
+
Leu
CAA
[ENA]
¡û
>W131011160
AICY01000266
Actinomycetota
Saccharomonospora saliphila YIM 90502 [AICY]
22528
22452
-
Leu
CAA
[ENA]
¡û
>W131186147
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
8550852
8550928
+
Leu
CAA
[ENA]
¡û
>W131222157
AUBB01000003
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
209401
209327
-
Leu
CAA
[ENA]
¡û
>W131222576
AUBJ01000007
Actinomycetota
Actinoalloteichus caeruleus DSM 43889 [AUBJ]
403064
403138
+
Leu
CAA
[ENA]
¡û
>W131231265
AUII01000012
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
80150
80076
-
Leu
CAA
[ENA]
¡û
>WENV180343220
OBLK01000286
[OBLK] soil metagenome; Clay
4765
4840
+
Leu
CAA
[ENA]
¢þ
>WENV181191894
OEPS010272342
[OEPS] soil metagenome; soil
199
273
+
Leu
CAA
[ENA]
¢þ
>WENV181297839
OFHL01000291
[OFHL] soil metagenome; Clay
1414
1339
-
Leu
CAA
[ENA]
¢þ
>WENV181597763
OGKZ01021808
[OGKZ] metagenome; Human gut stool
510
436
-
Leu
CAA
[ENA]
¢þ
>WENV181608915
OGLN01003496
[OGLN] metagenome; Human gut stool
7807
7881
+
Leu
CAA
[ENA]
¢þ
>W141185590
AYJW01000039
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
33699
33775
+
Leu
CAA
[ENA]
¡û
>W141199775
AYXG01000183
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
2799
2723
-
Leu
CAA
[ENA]
¡û
>W141215952
AZUM01000013
Actinomycetota
Saccharomonospora piscinae CNQ490 [AZUM]
57299
57373
+
Leu
CAA
[ENA]
¡û
>WENV170956477
MJUP01019201
[MJUP] soil metagenome; viral particles from soil sample MGM
280
354
+
Leu
CAA
[ENA]
¢þ
>C181016754
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
3239949
3240023
+
Leu
CAA
-
¡û
>C181019517
CP016353
Actinomycetota
Prauserella marina DSM 45268 [CP016353]
4661638
4661712
+
Leu
CAA
-
¡û
>C181081535
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
6511885
6511809
-
Leu
CAA
-
¡û
>C181124941
CP025990
Actinomycetota
Actinoalloteichus sp. AHMU CJ021 [CP025990]
5698336
5698262
-
Leu
CAA
-
¡û
>C191064807
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
6750063
6749987
-
Leu
CAA
-
¡û
>C191157680
CP038101
Actinomycetota
Saccharomonospora xinjiangensis 31sw [CP038101]
3128214
3128289
+
Leu
CAA
-
¡û
>W141563918
JIAI01000016
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
8034
8108
+
Leu
CAA
[ENA]
¡û
>W09108124
ABTA01000006
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
139783
139859
+
Leu
CAA
[ENA]
¡û
>W09109729
ABUM01000002
Actinomycetota
Saccharomonospora viridis DSM 43017 [ABUM]
175909
175833
-
Leu
CAA
[ENA]
¡û
>W141754548
JNVU01000003
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
3626
3550
-
Leu
CAA
[ENA]
¡û
>W141756309
JNXC01000003
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
537327
537401
+
Leu
CAA
[ENA]
¡û
>W141757611
JNYA01000376
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
11151
11075
-
Leu
CAA
[ENA]
¡û
>W141758006
JNYI01000185
Actinomycetota
Goodfellowiella coeruleoviolacea [JNYI]
15606
15532
-
Leu
CAA
[ENA]
¡û
>W141758244
JNYM01000444
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
19354
19428
+
Leu
CAA
[ENA]
¡û
>W141758381
JNYO01000013
Actinomycetota
Saccharothrix syringae [JNYO]
81784
81710
-
Leu
CAA
[ENA]
¡û
>W141758799
JNYW01000759
Actinomycetota
Saccharopolyspora phatthalungensis [JNYW]
275
199
-
Leu
CAA
[ENA]
¡û
>W141760402
JOAA01000001
Actinomycetota
Rhodococcus rhodnii [JOAA]
315657
315733
+
Leu
CAA
[ENA]
¡û
>W141761053
JOAL01001017
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JOAL]
1797
1723
-
Leu
CAA
[ENA]
¡û
>W141766231
JODV01000018
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JODV]
82085
82011
-
Leu
CAA
[ENA]
¡û
>W141766496
JOEA01000008
Actinomycetota
Lentzea albidocapillata [JOEA]
203657
203583
-
Leu
CAA
[ENA]
¡û
>W141766808
JOEF01000008
Actinomycetota
Allokutzneria albata [JOEF]
87547
87471
-
Leu
CAA
[ENA]
¡û
>W141768606
JOFI01000006
Actinomycetota
Lentzea aerocolonigenes [JOFI]
198579
198505
-
Leu
CAA
[ENA]
¡û
>W141771475
JOHE01001024
Actinomycetota
Lentzea aerocolonigenes [JOHE]
7714
7790
+
Leu
CAA
[ENA]
¡û
>W1910038411
BEGX01000045
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
40545
40469
-
Leu
CAA
[ENA]
¡û
>C09100647
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
6660146
6660070
-
Leu
CAA
[Ensembl]
¡û
>W1910994806
NKYE01000009
Actinomycetota
Amycolatopsis antarctica AU-G6 [NKYE]
173479
173405
-
Leu
CAA
[ENA]
¡û
>W1911679508
QHKI01000033
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
90064
89989
-
Leu
CAA
[ENA]
¡û
>W1810173467
PJNB01000001
Actinomycetota
Saccharopolyspora spinosa DSM 44228 [PJNB]
3196509
3196433
-
Leu
CAA
[ENA]
¡û
>W1810176402
PJPW02000135
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
22088
22164
+
Leu
CAA
[ENA]
¡û
>W1810254946
PQHZ01000071
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
1784
1709
-
Leu
CAA
[ENA]
¡û
>W1810356932
PVNH01000007
Actinomycetota
Prauserella shujinwangii CGMCC 4.7125 [PVNH]
298476
298401
-
Leu
CAA
[ENA]
¡û
>W1810393066
PYAX01000001
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
80328
80254
-
Leu
CAA
[ENA]
¡û
>W1810592221
QFWW01000030
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
246796
246722
-
Leu
CAA
[ENA]
¡û
>W1810597159
QGHB01000002
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
41604
41530
-
Leu
CAA
[ENA]
¡û
>W1810608734
QGTN01000010
Actinomycetota
Prauserella marina DSM 45268 [QGTN]
97628
97702
+
Leu
CAA
[ENA]
¡û
>W1810623485
QHCP01000024
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
12325
12399
+
Leu
CAA
[ENA]
¡û
>W1810697025
QLTT01000010
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
262057
261983
-
Leu
CAA
[ENA]
¡û
>W1810763035
QQAU01000006
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
205483
205409
-
Leu
CAA
[ENA]
¡û
>W1510013152
BBOJ01000017
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
219597
219523
-
Leu
CAA
[ENA]
¡û
>W1510073624
CDME01000008
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
968320
968246
-
Leu
CAA
[ENA]
¡û
>C10112945
CP001683
Actinomycetota
Saccharomonospora viridis DSM 43017 [CP001683]
2804002
2804078
+
Leu
CAA
[Ensembl]
¡û
>C11117078
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
4148119
4148195
+
Leu
CAA
[Ensembl]
¡û
>W1511360281
JRZE01000008
Actinomycetota
Saccharomonospora viridis JCM 3315 [JRZE]
53878
53954
+
Leu
CAA
[ENA]
¡û
>W1511529168
JYJG01000222
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
32432
32356
-
Leu
CAA
[ENA]
¡û
>W11152464
AEYC01000018
Actinomycetota
Saccharopolyspora spinosa NRRL 18395 [AEYC]
16032
16108
+
Leu
CAA
[ENA]
¡û
>W1511697479
LGDY01000126
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
21697
21621
-
Leu
CAA
[ENA]
¡û
>W1511697759
LGED01000252
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
11777
11703
-
Leu
CAA
[ENA]
¡û
>W11181132
AGIT01000009
Actinomycetota
Saccharomonospora iraqiensis YIM 90007 [AGIT]
17778
17702
-
Leu
CAA
[ENA]
¡û
>W11181175
AGIU01000001
Actinomycetota
Saccharomonospora azurea NA-128 [AGIU]
76327
76253
-
Leu
CAA
[ENA]
¡û
>C161045514
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
9288243
9288317
+
Leu
CAA
[Ensembl]
¡û
>W121010589
AGJI02000008
Actinomycetota
Saccharomonospora glauca K62 [AGJI]
51574
51648
+
Leu
CAA
[ENA]
¡û
>W121021611
AGVX02000252
Actinomycetota
Actinoalloteichus spitiensis RMV-1378 [AGVX]
24388
24314
-
Leu
CAA
[ENA]
¡û
>W121024713
AHBX01000096
Actinomycetota
Saccharomonospora azurea SZMC 14600 [AHBX]
57964
58038
+
Leu
CAA
[ENA]
¡û
>W121036259
AHLX01000005
Actinomycetota
Saccharomonospora marina XMU15 [AHLX]
212295
212371
+
Leu
CAA
[ENA]
¡û
>W121036305
AHLY01000003
Actinomycetota
Saccharomonospora cyanea NA-134 [AHLY]
1639758
1639832
+
Leu
CAA
[ENA]
¡û
>W121045481
AICV01000012
Actinomycetota
Saccharomonospora xinjiangensis XJ-54 [AICV]
3716251
3716175
-
Leu
CAA
[ENA]
¡û
>W1710512168
FMZE01000012
Actinomycetota
Prauserella marina [FMZE]
162600
162526
-
Leu
CAA
[ENA]
¡û
>W1710515801
FNCC01000013
Actinomycetota
Lentzea fradiae [FNCC]
175614
175538
-
Leu
CAA
[ENA]
¡û
>W1710519491
FNET01000020
Actinomycetota
Lentzea albidocapillata violacea [FNET]
106101
106025
-
Leu
CAA
[ENA]
¡û
>W1710524649
FNIX01000001
Actinomycetota
Lentzea jiangxiensis [FNIX]
1408569
1408645
+
Leu
CAA
[ENA]
¡û
>W1710529998
FNOK01000041
Actinomycetota
Saccharopolyspora shandongensis [FNOK]
83461
83535
+
Leu
CAA
[ENA]
¡û
>W1710530167
FNON01000012
Actinomycetota
Amycolatopsis xylanica [FNON]
174112
174186
+
Leu
CAA
[ENA]
¡û
>W1710550923
FOFR01000003
Actinomycetota
Lentzea xinjiangensis [FOFR]
184001
183927
-
Leu
CAA
[ENA]
¡û
>W1710551040
FOFT01000009
Actinomycetota
Lentzea flaviverrucosa [FOFT]
146790
146866
+
Leu
CAA
[ENA]
¡û
>W1710551134
FOFV01000006
Actinomycetota
Lentzea albida [FOFV]
22041
22117
+
Leu
CAA
[ENA]
¡û
>W1710556517
FOKG01000016
Actinomycetota
Amycolatopsis marina [FOKG]
91302
91378
+
Leu
CAA
[ENA]
¡û
>W1710572492
FOWS01000003
Actinomycetota
Saccharomonospora viridis [FOWS]
683039
682963
-
Leu
CAA
[ENA]
¡û
>W1710572728
FOWW01000012
Actinomycetota
Amycolatopsis arida deserti [FOWW]
56017
55943
-
Leu
CAA
[ENA]
¡û
>W1710574735
FOYL01000005
Actinomycetota
Lentzea waywayandensis [FOYL]
275977
275903
-
Leu
CAA
[ENA]
¡û
>W1710584419
FQVN01000002
Actinomycetota
Streptoalloteichus hindustanus [FQVN]
125179
125105
-
Leu
CAA
[ENA]
¡û
>W1710606468
FWXV01000003
Actinomycetota
Kibdelosporangium aridum [FWXV]
323287
323361
+
Leu
CAA
[ENA]
¡û
>W1710606832
FWYC01000010
Actinomycetota
Lentzea albidocapillata [FWYC]
282989
282915
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK