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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144962 (106 seq.)
>W1711066920
LSDI01000088
Bacillota
Peptostreptococcus anaerobius [LSDI]
454
378
-
Met
CAT
[ENA]
¡û
>WENV180117396
OARK01001355
[OARK] human gut metagenome; ENVO:feces
41
117
+
Ile2
CAT
[ENA]
¢þ
>WENV180130191
OATF01003389
[OATF] human gut metagenome; faeces
221
297
+
Ile2
CAT
[ENA]
¢þ
>WENV180163371
OAVH01006090
[OAVH] human gut metagenome; faeces
575
499
-
Ile2
CAT
[ENA]
¢þ
>WENV180176041
OAWC01010260
[OAWC] human gut metagenome; faeces
576
652
+
Ile2
CAT
[ENA]
¢þ
>WENV180189277
OAWX01032925
[OAWX] human gut metagenome; faeces
121
45
-
Ile2
CAT
[ENA]
¢þ
>WENV180196963
OBAA01017670
[OBAA] human gut metagenome; faeces
354
430
+
Ile2
CAT
[ENA]
¢þ
>WENV180337750
OBLG01112295
[OBLG] human gut metagenome; human gut
160
236
+
Ile2
CAT
[ENA]
¢þ
>WENV180422261
OBVS01002900
[OBVS] human gut metagenome; faeces
801
877
+
Ile2
CAT
[ENA]
¢þ
>WENV180455612
OBXO01015300
[OBXO] human gut metagenome; faeces
579
503
-
Ile2
CAT
[ENA]
¢þ
>WENV180458355
OBXV01015854
[OBXV] human gut metagenome; faeces
313
237
-
Ile2
CAT
[ENA]
¢þ
>WENV180491555
OBZV01011419
[OBZV] human gut metagenome; faeces
368
444
+
Ile2
CAT
[ENA]
¢þ
>WENV180513589
OCHA01119673
[OCHA] human gut metagenome; human gut
63
139
+
Ile2
CAT
[ENA]
¢þ
>WENV180541855
OCHS01020860
[OCHS] human gut metagenome; human gut
848
924
+
Ile2
CAT
[ENA]
¢þ
>WENV180542053
OCHS01052728
[OCHS] human gut metagenome; human gut
145
69
-
Ile2
CAT
[ENA]
¢þ
>WENV180577932
OCMB01002320
[OCMB] human gut metagenome; human gut
191
267
+
Ile2
CAT
[ENA]
¢þ
>WENV180604979
OCPS01056372
[OCPS] human gut metagenome; human gut
269
193
-
Ile2
CAT
[ENA]
¢þ
>WENV180615922
OCPZ01066931
[OCPZ] human gut metagenome; human gut
320
396
+
Ile2
CAT
[ENA]
¢þ
>WENV180622843
OCQC01234741
[OCQC] human gut metagenome; human gut
177
101
-
Ile2
CAT
[ENA]
¢þ
>WENV180624342
OCQH01034497
[OCQH] human gut metagenome; human gut
264
340
+
Ile2
CAT
[ENA]
¢þ
>WENV180628042
OCQO01024372
[OCQO] human gut metagenome; human gut
458
534
+
Ile2
CAT
[ENA]
¢þ
>WENV180631540
OCQY01017773
[OCQY] human gut metagenome; human gut
909
985
+
Ile2
CAT
[ENA]
¢þ
>WENV180774764
ODIJ01070560
[ODIJ] human metagenome; G_DNA_Tongue dorsum
89
165
+
Ile2
CAT
[ENA]
¢þ
>WENV180783952
ODIQ01058798
[ODIQ] human metagenome; G_DNA_Tongue dorsum
326
250
-
Ile2
CAT
[ENA]
¢þ
>WENV180820869
ODJR01079984
[ODJR] human metagenome; G_DNA_Tongue dorsum
109
33
-
Ile2
CAT
[ENA]
¢þ
>WENV180826464
ODJZ01003098
[ODJZ] human metagenome; G_DNA_Stool
3148
3224
+
Ile2
CAT
[ENA]
¢þ
>WENV180829477
ODKA01191155
[ODKA] human metagenome; G_DNA_Stool
213
137
-
Ile2
CAT
[ENA]
¢þ
>WENV180831042
ODKB01031364
[ODKB] human metagenome; G_DNA_Tongue dorsum
593
517
-
Ile2
CAT
[ENA]
¢þ
>WENV180858736
ODLC01028261
[ODLC] human metagenome; G_DNA_Tongue dorsum
703
627
-
Ile2
CAT
[ENA]
¢þ
>WENV180858773
ODLC01030617
[ODLC] human metagenome; G_DNA_Tongue dorsum
520
444
-
Ile2
CAT
[ENA]
¢þ
>WENV180950001
ODUG01063648
[ODUG] human metagenome; G_DNA_Tongue dorsum
80
4
-
Ile2
CAT
[ENA]
¢þ
>WENV180950134
ODUG01091074
[ODUG] human metagenome; G_DNA_Tongue dorsum
326
250
-
Ile2
CAT
[ENA]
¢þ
>WENV180976639
ODUY01184156
[ODUY] human metagenome; G_DNA_Supragingival plaque
89
165
+
Ile2
CAT
[ENA]
¢þ
>WENV181058914
ODYL01052187
[ODYL] human metagenome; G_DNA_Tongue dorsum
431
355
-
Ile2
CAT
[ENA]
¢þ
>WENV181058945
ODYL01058153
[ODYL] human metagenome; G_DNA_Tongue dorsum
350
274
-
Ile2
CAT
[ENA]
¢þ
>WENV181074995
OEAO01049443
[OEAO] human metagenome; G_DNA_Tongue dorsum
455
379
-
Ile2
CAT
[ENA]
¢þ
>WENV181113761
OEEL01099662
[OEEL] human metagenome; G_DNA_Tongue dorsum
199
123
-
Ile2
CAT
[ENA]
¢þ
>WENV181118925
OEFH01050574
[OEFH] human metagenome; G_DNA_Stool
165
89
-
Ile2
CAT
[ENA]
¢þ
>WENV181140506
OEGN01205699
[OEGN] human metagenome; G_DNA_Tongue dorsum
80
4
-
Ile2
CAT
[ENA]
¢þ
>WENV181250608
OFFN01037311
[OFFN] mouse gut metagenome; faeces
346
422
+
Ile2
CAT
[ENA]
¢þ
>WENV181259194
OFFV01030870
[OFFV] mouse gut metagenome; faeces
321
397
+
Ile2
CAT
[ENA]
¢þ
>WENV181326053
OFLK01000029
[OFLK] metagenome; faeces
75
1
-
Ile2
CAT
[ENA]
¢þ
>WENV181326077
OFLK01000052
[OFLK] metagenome; faeces
528
604
+
Ile2
CAT
[ENA]
¢þ
>WENV181328330
OFLT01000052
[OFLT] metagenome; faeces
75
1
-
Ile2
CAT
[ENA]
¢þ
>WENV181328337
OFLT01000057
[OFLT] metagenome; faeces
528
604
+
Ile2
CAT
[ENA]
¢þ
>WENV181336209
OFMD01000121
[OFMD] human gut metagenome; human gut
31931
32007
+
Ile2
CAT
[ENA]
¢þ
>WENV181347867
OFMM01049290
[OFMM] human gut metagenome; human gut
14
90
+
Ile2
CAT
[ENA]
¢þ
>WENV181486778
OGFN01023271
[OGFN] metagenome; Human gut stool
889
965
+
Ile2
CAT
[ENA]
¢þ
>WENV181538386
OGHY01007023
[OGHY] metagenome; Human gut stool
350
274
-
Ile2
CAT
[ENA]
¢þ
>WENV181630001
OGMP01019640
[OGMP] metagenome; Human gut stool
779
855
+
Ile2
CAT
[ENA]
¢þ
>WENV181653044
OGNY01000588
[OGNY] metagenome; Human gut stool
31558
31482
-
Ile2
CAT
[ENA]
¢þ
>WENV181653681
OGNY01015656
[OGNY] metagenome; Human gut stool
1402
1326
-
Ile2
CAT
[ENA]
¢þ
>WENV181674909
OGOP01000725
[OGOP] human gut metagenome; faeces
9604
9528
-
Met
CAT
[ENA]
¢þ
>WENV181696581
OGPD01001914
[OGPD] human gut metagenome; faeces
11207
11131
-
Met
CAT
[ENA]
¢þ
>WENV181798533
OGRV01003749
[OGRV] human gut metagenome; fecal sample 3 from infant 4
182
258
+
Ile2
CAT
[ENA]
¢þ
>WENV181800158
OGRY01015819
[OGRY] human gut metagenome; faeces
2487
2411
-
Ile2
CAT
[ENA]
¢þ
>WENV181820997
OGUD01005722
[OGUD] metagenome; Human gut stool
2345
2421
+
Ile2
CAT
[ENA]
¢þ
>WENV181935396
OGYU01003680
[OGYU] human gut metagenome; faeces
233
157
-
Ile2
CAT
[ENA]
¢þ
>WENV181976943
OHAD01006726
[OHAD] human gut metagenome; faeces
154
230
+
Ile2
CAT
[ENA]
¢þ
>WENV182127241
OHJU01009365
[OHJU] human gut metagenome; feces
1934
1858
-
Met
CAT
[ENA]
¢þ
>WENV182142999
OHKU01052812
[OHKU] human gut metagenome; feces
86
10
-
Met
CAT
[ENA]
¢þ
>WENV182202585
OHPO01018429
[OHPO] human gut metagenome; feces
386
310
-
Met
CAT
[ENA]
¢þ
>WENV182256067
OHTD01016094
[OHTD] human gut metagenome; feces
392
316
-
Met
CAT
[ENA]
¢þ
>WENV182352164
OIBI01012145
[OIBI] human gut metagenome; feces
165
241
+
Ile2
CAT
[ENA]
¢þ
>WENV182355510
OIBP01004340
[OIBP] human gut metagenome; feces
1328
1404
+
Ile2
CAT
[ENA]
¢þ
>WENV182382766
OIDS01029302
[OIDS] human gut metagenome; feces
589
665
+
Ile2
CAT
[ENA]
¢þ
>W141255289
CBTZ010000221
Bacillota
[Clostridium] dakarense 1 [CBTZ]
521
597
+
Met
CAT
[ENA]
¡û
>W141255305
CBTZ010000223
Bacillota
[Clostridium] dakarense 1 [CBTZ]
981
1057
+
Met
CAT
[ENA]
¡û
>W141255312
CBTZ010000227
Bacillota
[Clostridium] dakarense 1 [CBTZ]
151
75
-
Met
CAT
[ENA]
¡û
>WENV182621707
OJKJ01000512
[OJKJ] metagenome; faeces
18139
18063
-
Ile2
CAT
[ENA]
¢þ
>WENV182632536
OJKW01091784
[OJKW] metagenome; faeces
289
213
-
Ile2
CAT
[ENA]
¢þ
>WENV182699290
OJON01013327
[OJON] human gut metagenome; human gut
1575
1499
-
Met
CAT
[ENA]
¢þ
>W141279985
JAGS01000001
Bacillota
Ruminococcus albus AD2013 [JAGS]
610632
610706
+
Met
CAT
[ENA]
¡û
>W141280028
JAGS01000001
Bacillota
Ruminococcus albus AD2013 [JAGS]
2866775
2866701
-
Met
CAT
[ENA]
¡û
>WENV182841055
OKHP01005407
[OKHP] human gut metagenome; human gut
547
471
-
Ile2
CAT
[ENA]
¢þ
>C08002590
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
14441
14517
+
Met
CAT
[Ensembl]
¡û
>WENV183173343
OLPD01002404
[OLPD] human gut metagenome; faeces
228
304
+
Ile2
CAT
[ENA]
¢þ
>WENV183197904
OLPV01000219
[OLPV] human gut metagenome; faeces
19663
19587
-
Met
CAT
[ENA]
¢þ
>WENV183204728
OLPZ01000518
[OLPZ] human gut metagenome; faeces
30636
30560
-
Ile2
CAT
[ENA]
¢þ
>WENV183214892
OLQF01006403
[OLQF] human gut metagenome; faeces
313
237
-
Ile2
CAT
[ENA]
¢þ
>WENV183252550
OLRI01002837
[OLRI] human gut metagenome; faeces
182
258
+
Ile2
CAT
[ENA]
¢þ
>WENV183296333
OLSL01032405
[OLSL] human gut metagenome; faeces
331
407
+
Ile2
CAT
[ENA]
¢þ
>WENV183306774
OLTB01000981
[OLTB] human gut metagenome; faeces
157
233
+
Ile2
CAT
[ENA]
¢þ
>WENV183379128
OLYC01008763
[OLYC] human gut metagenome; feces
318
242
-
Ile2
CAT
[ENA]
¢þ
>WENV183517371
OMNP01000515
[OMNP] human gut metagenome; feces
338
414
+
Met
CAT
[ENA]
¢þ
>WENV183520658
OMNT01039363
[OMNT] human gut metagenome; faeces
582
506
-
Ile2
CAT
[ENA]
¢þ
>WENV183538465
OOAH01005673
[OOAH] human gut metagenome; human gut
4524
4448
-
Ile2
CAT
[ENA]
¢þ
>WENV183549845
OOAZ01024799
[OOAZ] human gut metagenome; human gut
773
849
+
Ile2
CAT
[ENA]
¢þ
>WENV183563687
OOBX01004924
[OOBX] human gut metagenome; human gut
586
510
-
Ile2
CAT
[ENA]
¢þ
>WENV183778436
PPYF01122811
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1313
1389
+
Ile2
CAT
[ENA]
¢þ
>WENV183783646
PPYF01241529
[PPYF] human gut metagenome; stool from patient with Crohn's disease
889
813
-
Ile2
CAT
[ENA]
¢þ
>WENV170687572
LFRM01199775
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3042
2966
-
Met
CAT
[ENA]
¢þ
>C181136087
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
13883
13959
+
Met
CAT
-
¡û
>C181136156
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2732745
2732669
-
Met
CAT
-
¡û
>C191222043
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
13787
13863
+
Met
CAT
-
¡û
>C191222116
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
2471895
2471819
-
Met
CAT
-
¡û
>W1910637522
LQGW01000028
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
9085
9009
-
Met
CAT
[ENA]
¡û
>W1910637530
LQGW01000033
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
8964
8888
-
Met
CAT
[ENA]
¡û
>W1810866569
QTXU01000095
Bacillota
Ruminococcus sp. AM43-6 [QTXU]
357
433
+
Met
CAT
[ENA]
¡û
>C151086632
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4626973
4627049
+
Met
CAT
[Ensembl]
¡û
>C151101515
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
2707201
2707125
-
Met
CAT
[Ensembl]
¡û
>W10115135
ADJN01000013
Bacillota
Peptostreptococcus anaerobius 653-L [ADJN]
121
197
+
Met
CAT
[ENA]
¡û
>W11118721
ADJN01000013
Bacillota
Peptostreptococcus anaerobius 653-L [ADJN]
121
197
+
Met
CAT
[ENA]
¡û
>W1610907490
LSDI01000088
Bacillota
Peptostreptococcus anaerobius [LSDI]
454
378
-
Met
CAT
[ENA]
¡û
>W1710586973
FQXP01000017
Bacillota
Clostridium collagenovorans DSM 3089 [FQXP]
23625
23549
-
Met
CAT
[ENA]
¡û
>W1710589440
FRAD01000037
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
652
728
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK