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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144969 (5 seq.)
>WENV180249159
OBEQ010173851
[OBEQ] groundwater metagenome; groundwater
390
316
-
Pro
CGG
[ENA]
¡û
>WENV180257889
OBEQ010951043
[OBEQ] groundwater metagenome; groundwater
9517
9443
-
Pro
CGG
[ENA]
¡û
>WENV183680046
ORMF010131813
[ORMF] groundwater metagenome; groundwater
55695
55618
-
Pro
CGG
[ENA]
¡û
>WENV183687815
ORMF011195510
[ORMF] groundwater metagenome; groundwater
471
397
-
Pro
CGG
[ENA]
¡û
>WENV183691567
ORMF011783500
[ORMF] groundwater metagenome; groundwater
3
78
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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