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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144973 (90 seq.)
>W1710785269
LJHS01000012
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
40764
40840
+
Arg
CCT
[ENA]
¡û
>W1710785670
LJIB01000019
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
30598
30522
-
Arg
CCT
[ENA]
¡û
>W1710861531
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
401770
401694
-
Arg
CCT
[ENA]
¡û
>W1710868582
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
401745
401669
-
Arg
CCT
[ENA]
¡û
>W1710883218
LMVL01000034
Alphaproteobacteria
Agrobacterium vitis [LMVL]
111514
111590
+
Arg
CCT
[ENA]
¡û
>W1710887826
LMZF01000028
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
455778
455702
-
Arg
CCT
[ENA]
¡û
>W1710890869
LNCD01000137
Alphaproteobacteria
Rhizobium altiplani BR10423 [LNCD]
54115
54039
-
Arg
CCT
[ENA]
¡û
>W1710936059
LOKY01000018
Alphaproteobacteria
Rhizobium sp. R693 [LOKY]
43704
43780
+
Arg
CCT
[ENA]
¡û
>W1710936107
LOKZ01000015
Alphaproteobacteria
Rhizobium sp. R711 [LOKZ]
11080
11004
-
Arg
CCT
[ENA]
¡û
>W1710936154
LOLA01000015
Alphaproteobacteria
Rhizobium sp. R72 [LOLA]
11080
11004
-
Arg
CCT
[ENA]
¡û
>W1711116207
LUAV01000016
Alphaproteobacteria
Ensifer aridi [LUAV]
14386
14462
+
Arg
CCT
[ENA]
¡û
>W1711120310
LUFU01000027
Alphaproteobacteria
Ensifer aridi [LUFU]
14388
14464
+
Arg
CCT
[ENA]
¡û
>W1711120358
LUFV01000026
Alphaproteobacteria
Ensifer aridi [LUFV]
14387
14463
+
Arg
CCT
[ENA]
¡û
>W1711120409
LUFW01000035
Alphaproteobacteria
Ensifer aridi [LUFW]
14388
14464
+
Arg
CCT
[ENA]
¡û
>W1711120460
LUFX01000030
Alphaproteobacteria
Ensifer aridi [LUFX]
14387
14463
+
Arg
CCT
[ENA]
¡û
>W1711213629
LXKM01000043
Alphaproteobacteria
Agrobacterium sp. 13-626 [LXKM]
424628
424552
-
Arg
CCT
[ENA]
¡û
>W1711315247
MAVS01000070
Alphaproteobacteria
Agrobacterium vitis [MAVS]
368093
368017
-
Arg
CCT
[ENA]
¡û
>W1711325901
MBEV01000009
Alphaproteobacteria
Agrobacterium vitis [MBEV]
120938
120862
-
Arg
CCT
[ENA]
¡û
>W1711325945
MBEX01000010
Alphaproteobacteria
Agrobacterium vitis [MBEX]
368092
368016
-
Arg
CCT
[ENA]
¡û
>W1711326003
MBEY01000018
Alphaproteobacteria
Agrobacterium vitis [MBEY]
220285
220209
-
Arg
CCT
[ENA]
¡û
>W1711326045
MBEZ01000007
Alphaproteobacteria
Agrobacterium vitis [MBEZ]
101603
101679
+
Arg
CCT
[ENA]
¡û
>W1711326125
MBFA01000073
Alphaproteobacteria
Agrobacterium vitis [MBFA]
95901
95977
+
Arg
CCT
[ENA]
¡û
>W1711326135
MBFB01000009
Alphaproteobacteria
Agrobacterium vitis [MBFB]
75019
75095
+
Arg
CCT
[ENA]
¡û
>W1711326185
MBFC01000039
Alphaproteobacteria
Agrobacterium vitis [MBFC]
95895
95971
+
Arg
CCT
[ENA]
¡û
>W1711326238
MBFD01000018
Alphaproteobacteria
Agrobacterium vitis [MBFD]
62937
63013
+
Arg
CCT
[ENA]
¡û
>W1711326295
MBFE01000033
Alphaproteobacteria
Agrobacterium vitis [MBFE]
121033
120957
-
Arg
CCT
[ENA]
¡û
>W1711353258
MDDV01000005
Alphaproteobacteria
Ensifer sp. LCM 4579 [MDDV]
232870
232794
-
Arg
CCT
[ENA]
¡û
>W1711384897
MEDN01000002
Alphaproteobacteria
Agrobacterium sp. SCN 61-19 [MEDN]
268089
268013
-
Arg
CCT
[ENA]
¡û
>W1711489087
MKIM01000031
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
358737
358661
-
Arg
CCT
[ENA]
¡û
>W1711489119
MKIN01000023
Alphaproteobacteria
Allorhizobium taibaishanense [MKIN]
94184
94260
+
Arg
CCT
[ENA]
¡û
>W1711959666
NBZE01000015
Alphaproteobacteria
Allorhizobium ampelinum vitis [NBZE]
96377
96453
+
Arg
CCT
[ENA]
¡û
>C171050024
CP016499
Alphaproteobacteria
Agrobacterium sp. RAC06 [CP016499]
3269612
3269536
-
Arg
CCT
-
¡û
>C171105007
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
2184345
2184421
+
Arg
CCT
-
¡û
>C171115045
CP021024
Alphaproteobacteria
Rhizobium sp. TAL182 [CP021024]
4164827
4164903
+
Arg
CCT
-
¡û
>W131036178
ALJF01000002
Alphaproteobacteria
Agrobacterium albertimagni AOL15 [ALJF]
384674
384598
-
Arg
CCT
[ENA]
¡û
>W131160070
AQWH01000001
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
154619
154543
-
Arg
CCT
[ENA]
¡û
>W131173665
ARHV01000020
Alphaproteobacteria
Rhizobium sp. 42MFCr.1 [ARHV]
8916
8840
-
Arg
CCT
[ENA]
¡û
>W131214135
ATTO01000030
Alphaproteobacteria
Rhizobium favelukesii OR191 [ATTO]
29573
29497
-
Arg
CCT
[ENA]
¡û
>W131219937
ATYY01000045
Alphaproteobacteria
Rhizobium mesoamericanum STM 6155 [ATYY]
44551
44627
+
Arg
CCT
[ENA]
¡û
>W131227340
AUFB01000027
Alphaproteobacteria
Rhizobium leucaenae USDA 9039 [AUFB]
1530
1454
-
Arg
CCT
[ENA]
¡û
>W131242246
CANI01000031
Alphaproteobacteria
Rhizobium mesoamericanum STM3625 [CANI]
43652
43728
+
Arg
CCT
[ENA]
¡û
>WENV181414459
OGCL01000423
[OGCL] hot springs metagenome; Hot spring water
31086
31010
-
Arg
CCT
[ENA]
¢þ
>WENV181416307
OGCL01071601
[OGCL] hot springs metagenome; Hot spring water
73
-1
-
Arg
CCT
[ENA]
¢þ
>W141180668
AYGY02000092
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
65198
65274
+
Arg
CCT
[ENA]
¡û
>W141207515
AZNV01000040
Alphaproteobacteria
Rhizobium sp. IBUN [AZNV]
8396
8320
-
Arg
CCT
[ENA]
¡û
>W141207616
AZNX01000007
Alphaproteobacteria
Ensifer aridi TW10 [AZNX]
413753
413677
-
Arg
CCT
[ENA]
¡û
>W141216438
AZUW01000010
Alphaproteobacteria
Ensifer sp. WSM1721 [AZUW]
14754
14830
+
Arg
CCT
[ENA]
¡û
>WENV182556867
OJDH01000457
[OJDH] seawater metagenome; Sea water
994
1070
+
Arg
CCT
[ENA]
¢þ
>WENV182575524
OJFV01000026
[OJFV] seawater metagenome; Sea water
8345
8269
-
Arg
CCT
[ENA]
¢þ
>WENV182590666
OJIJ01005222
[OJIJ] seawater metagenome; Sea water
140
64
-
Arg
CCT
[ENA]
¢þ
>WENV170499428
CEVT01158325
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2440
2516
+
Arg
CCT
[ENA]
¢þ
>WENV170680906
LFEF01033077
[LFEF] freshwater metagenome; waterbloom
230341
230265
-
Arg
CCT
[ENA]
¢þ
>WENV170781839
MAAC01001860
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2797
2721
-
Arg
CCT
[ENA]
¢þ
>WENV170781910
MAAC01004239
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
77
1
-
Arg
CCT
[ENA]
¢þ
>WENV170781936
MAAC01004759
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
41
117
+
Arg
CCT
[ENA]
¢þ
>WENV170794497
MDSV01133023
[MDSV] marine metagenome; seawater
9716
9792
+
Arg
CCT
[ENA]
¢þ
>WENV170938010
MDTG01301974
[MDTG] marine metagenome; seawater
2090
2014
-
Arg
CCT
[ENA]
¢þ
>C181099262
CP024311
Alphaproteobacteria
Rhizobium sp. NXC24 [CP024311]
3692625
3692701
+
Arg
CCT
-
¡û
>C191093763
CP032694
Alphaproteobacteria
Rhizobium jaguaris CCGE525 [CP032694]
3998129
3998205
+
Arg
CCT
-
¡û
>W141560482
JHXQ01000004
Alphaproteobacteria
Allorhizobium undicola ORS 992 = ATCC 700741 [JHXQ]
82435
82511
+
Arg
CCT
[ENA]
¡û
>W141816615
JQJZ01000022
Alphaproteobacteria
Rhizobium sp. OV201 [JQJZ]
92377
92453
+
Arg
CCT
[ENA]
¡û
>W141817672
JQKY01000005
Alphaproteobacteria
Rhizobium sp. CF394 [JQKY]
403070
402994
-
Arg
CCT
[ENA]
¡û
>W141817933
JQLD01000006
Alphaproteobacteria
Rhizobium sp. YR519 [JQLD]
403519
403443
-
Arg
CCT
[ENA]
¡û
>C09100952
CP000633
Alphaproteobacteria
Allorhizobium ampelinum S4 [CP000633, CP000634]
3419035
3419111
+
Arg
CCT
[Ensembl]
¡û
>W1910229391
FNXB01000001
Alphaproteobacteria
Rhizobium tibeticum [FNXB]
45983
46059
+
Arg
CCT
[ENA]
¡û
>C141004097
CP005950
Alphaproteobacteria
Rhizobium etli bv. mimosae str. Mim1 [CP005950]
3938552
3938628
+
Arg
CCT
[Ensembl]
¡û
>W1810195526
PKRP01000005
Alphaproteobacteria
Rhizobium sp. TH135 [PKRP]
92915
92991
+
Arg
CCT
[ENA]
¡û
>W1810365582
PVUG01000008
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
40502
40426
-
Arg
CCT
[ENA]
¡û
>W1810403677
PYJN01000022
Alphaproteobacteria
Rhizobium sp. SEMIA4064 [PYJN]
44268
44344
+
Arg
CCT
[ENA]
¡û
>C151072518
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
2623390
2623466
+
Arg
CCT
[Ensembl]
¡û
>C151101464
HG916852
Alphaproteobacteria
Rhizobium favelukesii LPU83 [HG916852]
3832177
3832253
+
Arg
CCT
[Ensembl]
¡û
>W1511433870
JUHN01000022
Alphaproteobacteria
Rhizobium sp. CF048 [JUHN]
11515
11439
-
Arg
CCT
[ENA]
¡û
>W1511582727
LATE01000162
Alphaproteobacteria
Sinorhizobium sp. PC2 [LATE]
4749
4673
-
Arg
CCT
[ENA]
¡û
>C161058073
CP013643
Alphaproteobacteria
Rhizobium sp. N941 [CP013643]
4208053
4208129
+
Arg
CCT
[Ensembl]
¡û
>C161070351
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
330150
330226
+
Arg
CCT
[Ensembl]
¡û
>W121044120
AHZC01000144
Alphaproteobacteria
Rhizobium sp. PDO1-076 [AHZC]
32378
32302
-
Arg
CCT
[ENA]
¡û
>W121066339
AJQT01000026
Alphaproteobacteria
Sinorhizobium sojae CCBAU 05684 [AJQT]
25826
25750
-
Arg
CCT
[ENA]
¡û
>W121086546
AKKA01000020
Alphaproteobacteria
Rhizobium sp. CF122 [AKKA]
45011
45087
+
Arg
CCT
[ENA]
¡û
>W1610649075
LJHS01000012
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
40764
40840
+
Arg
CCT
[ENA]
¡û
>W1610649476
LJIB01000019
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
30598
30522
-
Arg
CCT
[ENA]
¡û
>W1610723877
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
401770
401694
-
Arg
CCT
[ENA]
¡û
>W1610730928
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
401745
401669
-
Arg
CCT
[ENA]
¡û
>W1610745144
LMVL01000034
Alphaproteobacteria
Agrobacterium vitis [LMVL]
111514
111590
+
Arg
CCT
[ENA]
¡û
>W1610748526
LMZF01000028
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
455778
455702
-
Arg
CCT
[ENA]
¡û
>W1610751265
LNCD01000137
Alphaproteobacteria
Rhizobium altiplani BR10423 [LNCD]
54115
54039
-
Arg
CCT
[ENA]
¡û
>W1611000633
LXKM01000043
Alphaproteobacteria
Agrobacterium sp. 13-626 [LXKM]
424628
424552
-
Arg
CCT
[ENA]
¡û
>W1710547318
FOCV01000003
Alphaproteobacteria
Rhizobium tibeticum [FOCV]
46346
46422
+
Arg
CCT
[ENA]
¡û
>W1710591657
FRBW01000004
Alphaproteobacteria
Roseibium suaedae [FRBW]
287965
288041
+
Arg
CCT
[ENA]
¡û
>W1710596555
FTMQ01000004
Alphaproteobacteria
Rhizobium sp. RU33A [FTMQ]
90378
90454
+
Arg
CCT
[ENA]
¡û
>W1710607626
FXAF01000001
Alphaproteobacteria
Xaviernesmea oryzae [FXAF]
96384
96460
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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