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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144982 (91 seq.)
>W1710854575
LLXP01000001
Gammaproteobacteria
Pseudomonas chengduensis alcaliphila [LLXP]
1087983
1088059
+
Pro
TGG
[ENA]
¡û
>W1710872520
LMMB01000001
Gammaproteobacteria
Pseudomonas sp. Leaf83 [LMMB]
526498
526422
-
Pro
TGG
[ENA]
¡û
>W1711079658
LSOF01000013
Gammaproteobacteria
Pseudomonas sp. BMS12 [LSOF]
210662
210586
-
Pro
TGG
[ENA]
¡û
>W1711081699
LSSW01000028
Gammaproteobacteria
Pseudomonas composti [LSSW]
91647
91723
+
Pro
TGG
[ENA]
¡û
>W1711268758
LZDG02000047
Gammaproteobacteria
Pseudomonas sp. AU11447 [LZDG]
11668
11744
+
Pro
TGG
[ENA]
¡û
>W1711295474
MACM02000021
Gammaproteobacteria
Pseudomonas sp. AU12215 [MACM]
81772
81848
+
Pro
TGG
[ENA]
¡û
>W1711744386
MUHV01000004
Gammaproteobacteria
Pseudomonas sp. T [MUHV]
358683
358759
+
Pro
TGG
[ENA]
¡û
>W1712105970
NIUB01000014
Gammaproteobacteria
Pseudomonas oleovorans subsp. oleovorans [NIUB]
11132
11056
-
Pro
TGG
[ENA]
¡û
>W1712108218
NJBA01000014
Gammaproteobacteria
Pseudomonas nitroreducens [NJBA]
4700
4624
-
Pro
TGG
[ENA]
¡û
>C171046156
CP016162
Gammaproteobacteria
Pseudomonas alcaliphila JAB1 [CP016162]
846668
846744
+
Pro
TGG
-
¡û
>C171060198
CP017290
Gammaproteobacteria
Pseudomonas sp. LPH1 [CP017290]
4011051
4010975
-
Pro
TGG
-
¡û
>W131052595
AMZB01000136
Gammaproteobacteria
Pseudomonas nitroreducens TX1 [AMZB]
20882
20806
-
Pro
TGG
[ENA]
¡û
>W131059030
ANGB01000008
Gammaproteobacteria
Pseudomonas chengduensis 34 [ANGB]
665531
665607
+
Pro
TGG
[ENA]
¡û
>W131210494
ATKM01000005
Gammaproteobacteria
Pseudomonas sp. P818 [ATKM]
459946
460022
+
Pro
TGG
[ENA]
¡û
>C017161
CP000680
Gammaproteobacteria
Pseudomonas mendocina [CP000680]
863208
863284
+
Pro
TGG
[Ensembl]
¡û
>W141041527
AMCD02000001
Gammaproteobacteria
Pseudomonas mendocina S5.2 [AMCD]
1850651
1850727
+
Pro
TGG
[ENA]
¡û
>W141104368
AVOF01000417
Gammaproteobacteria
Pseudomonas sp. EGD-AK9 [AVOF]
646
570
-
Pro
TGG
[ENA]
¡û
>W141106864
AVQF01000001
Gammaproteobacteria
Pseudomonas chengduensis EGD-AQ5 [AVQF]
1086557
1086633
+
Pro
TGG
[ENA]
¡û
>WENV181731473
OGQD01001012
[OGQD] human gut metagenome; faeces
7984
8060
+
Pro
TGG
[ENA]
¢þ
>W141213267
AZRU01000156
Gammaproteobacteria
Pseudomonas nitroreducens HBP1 [AZRU]
2959
2883
-
Pro
TGG
[ENA]
¡û
>W141230778
BATI01000033
Gammaproteobacteria
Pseudomonas alcaligenes NBRC 14159 [BATI]
73588
73512
-
Pro
TGG
[ENA]
¡û
>W141242343
CAIG01000017
Gammaproteobacteria
Pseudomonas oleovorans CECT 5344 [CAIG]
335640
335564
-
Pro
TGG
[ENA]
¡û
>WENV183743210
PJUJ01000157
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
5318
5242
-
Pro
TGG
[ENA]
¢þ
>WENV183744005
PJUK01000122
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
5318
5242
-
Pro
TGG
[ENA]
¢þ
>WENV183744767
PJUL01000203
[PJUL] feces metagenome; Chicken feces enriched on filter paper
5318
5242
-
Pro
TGG
[ENA]
¢þ
>WENV170226699
CEQF01008030
[CEQF] marine metagenome genome assembly TARA_068_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
88
12
-
Pro
TGG
[ENA]
¢þ
>WENV170408431
CEUI01026223
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
23837
23761
-
Pro
TGG
[ENA]
¢þ
>WENV170436193
CEUT01027899
[CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
264
188
-
Pro
TGG
[ENA]
¢þ
>WENV170457883
CEVB01004982
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
259
183
-
Pro
TGG
[ENA]
¢þ
>W141463619
JFJN01000028
Gammaproteobacteria
Pseudomonas composti AD6 [JFJN]
41935
41859
-
Pro
TGG
[ENA]
¡û
>WENV170965026
MTET01000893
[MTET] soil metagenome; garden soil control
8916
8840
-
Pro
TGG
[ENA]
¢þ
>WENV170965559
MTEU01004189
[MTEU] soil metagenome; naturally attenuated soil
13349
13273
-
Pro
TGG
[ENA]
¢þ
>WENV170965661
MTEU01005582
[MTEU] soil metagenome; naturally attenuated soil
87609
87533
-
Pro
TGG
[ENA]
¢þ
>WENV170965789
MTEV01003809
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
7993
8069
+
Pro
TGG
[ENA]
¢þ
>WENV170966135
MTEX01002489
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
7993
8069
+
Pro
TGG
[ENA]
¢þ
>C181088002
CP023641
Gammaproteobacteria
Pseudomonas mendocina MAE1-K [CP023641]
4606403
4606327
-
Pro
TGG
-
¡û
>C181158244
CP027657
Gammaproteobacteria
Pseudomonas mendocina NEB698 [CP027657]
1335637
1335561
-
Pro
TGG
-
¡û
>C181202651
CP031606
Gammaproteobacteria
Pseudomonas sp. phDV1 [CP031606]
761521
761597
+
Pro
TGG
-
¡û
>C191204323
LR134290
Gammaproteobacteria
Pseudomonas mendocina NCTC10897 [LR134290]
983730
983806
+
Pro
TGG
-
¡û
>W09106357
AAUL01000025
Gammaproteobacteria
Pseudomonas mendocina ymp [AAUL]
25958
26034
+
Pro
TGG
[ENA]
¡û
>W141728766
JNHE01000001
Gammaproteobacteria
Pseudomonas oleovorans [JNHE]
47360
47436
+
Pro
TGG
[ENA]
¡û
>W141790563
JOVT01000001
Gammaproteobacteria
Pseudomonas mendocina [JOVT]
159479
159555
+
Pro
TGG
[ENA]
¡û
>W141809645
JPRQ01000012
Gammaproteobacteria
Pseudomonas sp. 1-7 [JPRQ]
15947
15871
-
Pro
TGG
[ENA]
¡û
>W1910548416
FZOM01000004
Gammaproteobacteria
Pseudomonas nitroreducens LMG 21614 [FZOM]
350218
350142
-
Pro
TGG
[ENA]
¡û
>W1910928623
NIQU01000001
Gammaproteobacteria
Pseudomonas sediminis PI11 [NIQU]
717123
717047
-
Pro
TGG
[ENA]
¡û
>W1910928712
NIQV01000013
Gammaproteobacteria
Pseudomonas toyotomiensis DSM 26169 [NIQV]
11068
11144
+
Pro
TGG
[ENA]
¡û
>W1911693796
QLYU01000013
Gammaproteobacteria
Pseudomonas sp. MDMC224 [QLYU]
36866
36942
+
Pro
TGG
[ENA]
¡û
>W1911693826
QLYV01000048
Gammaproteobacteria
Pseudomonas sp. MDMC216 [QLYV]
144
68
-
Pro
TGG
[ENA]
¡û
>W1911693867
QLYW01000034
Gammaproteobacteria
Pseudomonas sp. MDMC17 [QLYW]
36836
36912
+
Pro
TGG
[ENA]
¡û
>W1911765659
QXDA01000002
Gammaproteobacteria
Pseudomonas oleovorans E1205 [QXDA]
75699
75623
-
Pro
TGG
[ENA]
¡û
>W1810100454
PGLR01000005
Gammaproteobacteria
Pseudomonas sp. ZH-FAD [PGLR]
10237
10161
-
Pro
TGG
[ENA]
¡û
>W1810171800
PJLX01000002
Gammaproteobacteria
Pseudomonas sp. YY-1 [PJLX]
200211
200287
+
Pro
TGG
[ENA]
¡û
>W1810297033
PTLV01000230
Gammaproteobacteria
Pseudomonas oleovorans YKJ [PTLV]
14282
14206
-
Pro
TGG
[ENA]
¡û
>W1810484203
QASO01000102
Gammaproteobacteria
Pseudomonas indoloxydans JCM 14246 [QASO]
11051
10975
-
Pro
TGG
[ENA]
¡û
>C151093937
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1348855
1348779
-
Pro
TGG
-
¡û
>C151100233
HG322950
Gammaproteobacteria
Pseudomonas knackmussii B13 [HG322950]
5010422
5010346
-
Pro
TGG
[Ensembl]
¡û
>C151101374
HG916826
Gammaproteobacteria
Pseudomonas oleovorans CECT 5344 CECT5344 [HG916826]
708690
708766
+
Pro
TGG
[Ensembl]
¡û
>C151102235
LK391695
Gammaproteobacteria
Pseudomonas oleovorans [LK391695]
709812
709888
+
Pro
TGG
[Ensembl]
¡û
>W1510014590
BBQC01000002
Gammaproteobacteria
Pseudomonas mendocina NBRC 14162 [BBQC]
769908
769984
+
Pro
TGG
[ENA]
¡û
>W1510015123
BBQO01000001
Gammaproteobacteria
Pseudomonas toyotomiensis KF710 [BBQO]
297594
297670
+
Pro
TGG
[ENA]
¡û
>C11117340
CP002620
Gammaproteobacteria
Pseudomonas mendocina NK-01 [CP002620]
967253
967329
+
Pro
TGG
[Ensembl]
¡û
>W1511307126
JPMY01000010
Gammaproteobacteria
Pseudomonas sp. ML96 [JPMY]
345385
345309
-
Pro
TGG
[ENA]
¡û
>W1511399798
JTFL01000133
Gammaproteobacteria
Pseudomonas oleovorans S1 [JTFL]
1313189
1313265
+
Pro
TGG
[ENA]
¡û
>W1511430144
JUEH01000017
Gammaproteobacteria
Pseudomonas nitroreducens Aramco J [JUEH]
143223
143299
+
Pro
TGG
[ENA]
¡û
>W1511534528
JYOA01000011
Gammaproteobacteria
Pseudomonas sp. 21 [JYOA]
165134
165210
+
Pro
TGG
[ENA]
¡û
>C161051527
CP013124
Gammaproteobacteria
Pseudomonas mendocina S5.2 [CP013124]
4136972
4136896
-
Pro
TGG
-
¡û
>C161077569
CP014784
Gammaproteobacteria
Pseudomonas alcaligenes NEB 585 [CP014784]
4059254
4059178
-
Pro
TGG
-
¡û
>W121112382
ALKM01000008
Gammaproteobacteria
Pseudomonas mendocina DLHK [ALKM]
72072
72148
+
Pro
TGG
[ENA]
¡û
>W1610060065
BCBL01000064
Gammaproteobacteria
Pseudomonas sp. NBRC 111135 [BCBL]
8433
8509
+
Pro
TGG
[ENA]
¡û
>WENV007300
AACY020191228
Marine microbial communities from Global Ocean Sampling (GOS)
1347
1425
+
Pro
TGG
[ENA]
>W1610716852
LLXP01000001
Gammaproteobacteria
Pseudomonas chengduensis alcaliphila [LLXP]
1087983
1088059
+
Pro
TGG
[ENA]
¡û
>W1610734866
LMMB01000001
Gammaproteobacteria
Pseudomonas sp. Leaf83 [LMMB]
526498
526422
-
Pro
TGG
[ENA]
¡û
>W1610918568
LSOF01000013
Gammaproteobacteria
Pseudomonas sp. BMS12 [LSOF]
210662
210586
-
Pro
TGG
[ENA]
¡û
>W1610920534
LSSW01000028
Gammaproteobacteria
Pseudomonas composti [LSSW]
91647
91723
+
Pro
TGG
[ENA]
¡û
>W1611029570
LZDG02000047
Gammaproteobacteria
Pseudomonas sp. AU11447 [LZDG]
11668
11744
+
Pro
TGG
[ENA]
¡û
>W1611050861
MACM02000021
Gammaproteobacteria
Pseudomonas sp. AU12215 [MACM]
81772
81848
+
Pro
TGG
[ENA]
¡û
>W1710057188
BCBL01000064
Gammaproteobacteria
Pseudomonas sp. NBRC 111135 [BCBL]
8433
8509
+
Pro
TGG
[ENA]
¡û
>W1710075529
BCZV01000001
Gammaproteobacteria
Pseudomonas alcaliphila NBRC 102411 [BCZV]
556101
556177
+
Pro
TGG
[ENA]
¡û
>W1710076276
BDAI01000003
Gammaproteobacteria
Pseudomonas nitroreducens NBRC 12694 [BDAI]
339509
339585
+
Pro
TGG
[ENA]
¡û
>W1710076314
BDAJ01000003
Gammaproteobacteria
Pseudomonas oleovorans NBRC 14167 [BDAJ]
10495
10419
-
Pro
TGG
[ENA]
¡û
>W1710076429
BDAL01000011
Gammaproteobacteria
Pseudomonas oleovorans subsp. oleovorans NBRC 13583 [BDAL]
11007
10931
-
Pro
TGG
[ENA]
¡û
>W1710509476
FMXG01000001
Gammaproteobacteria
Pseudomonas sp. NFPP33 [FMXG]
1018073
1018149
+
Pro
TGG
[ENA]
¡û
>W1710512731
FMZQ01000011
Gammaproteobacteria
Pseudomonas chengduensis [FMZQ]
131115
131191
+
Pro
TGG
[ENA]
¡û
>W1710513459
FNAE01000001
Gammaproteobacteria
Pseudomonas alcaliphila [FNAE]
1323248
1323172
-
Pro
TGG
[ENA]
¡û
>W1710525222
FNJJ01000002
Gammaproteobacteria
Pseudomonas guguanensis [FNJJ]
302737
302661
-
Pro
TGG
[ENA]
¡û
>W1710542356
FNZC01000010
Gammaproteobacteria
Pseudomonas oleovorans [FNZC]
10872
10796
-
Pro
TGG
[ENA]
¡û
>W1710572304
FOWP01000001
Gammaproteobacteria
Pseudomonas composti [FOWP]
266939
266863
-
Pro
TGG
[ENA]
¡û
>W1710573356
FOXK01000012
Gammaproteobacteria
Pseudomonas toyotomiensis [FOXK]
11014
11090
+
Pro
TGG
[ENA]
¡û
>W1710580208
FPJD01000001
Gammaproteobacteria
Pseudomonas sp. NFACC19-2 [FPJD]
782141
782065
-
Pro
TGG
[ENA]
¡û
>W1710596497
FTMP01000005
Gammaproteobacteria
Pseudomonas alcaligenes [FTMP]
243609
243685
+
Pro
TGG
[ENA]
¡û
>W1710598260
FTNW01000003
Gammaproteobacteria
Pseudomonas alcaligenes [FTNW]
228960
229036
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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