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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145006 (15 seq.)
>WENV180258978
OBEQ011061730
[OBEQ] groundwater metagenome; groundwater
607
532
-
Ile
GAT
[ENA]
¢þ
>WENV180261793
OBEQ011326240
[OBEQ] groundwater metagenome; groundwater
622
548
-
Ile
GAT
[ENA]
¢þ
>WENV180262672
OBEQ011406788
[OBEQ] groundwater metagenome; groundwater
316
390
+
Ile
GAT
[ENA]
¢þ
>WENV180266438
OBEQ011755362
[OBEQ] groundwater metagenome; groundwater
926
850
-
Ile
GAT
[ENA]
¢þ
>WENV181189303
OEOF01021153
[OEOF] activated sludge metagenome; Activated Sludge
406
480
+
Ile
GAT
[ENA]
¢þ
>WENV181192558
OEPS010774494
[OEPS] soil metagenome; soil
213
139
-
Ile
GAT
[ENA]
¢þ
>WENV183688628
ORMF011318734
[ORMF] groundwater metagenome; groundwater
210
136
-
Ile
GAT
[ENA]
¢þ
>WENV170564649
CZKU01000018
[CZKU] soil metagenome genome assembly CiPEHR-AK-2010-FBin.27, contig:; soil
5811
5885
+
Ile
GAT
[ENA]
¢þ
>C151091956
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
1429135
1429211
+
Ile
GAT
-
¡û
>C151091984
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
8290482
8290406
-
Ile
GAT
-
¡û
>C151092011
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
7490707
7490631
-
Ile
GAT
-
¡û
>C151093436
CP012333
Myxococcota
Labilithrix luteola DSM 27648 [CP012333]
3941128
3941202
+
Ile
GAT
-
¡û
>C151093440
CP012333
Myxococcota
Labilithrix luteola DSM 27648 [CP012333]
5938618
5938692
+
Ile
GAT
-
¡û
>C151093444
CP012333
Myxococcota
Labilithrix luteola DSM 27648 [CP012333]
7088380
7088454
+
Ile
GAT
-
¡û
>C151093446
CP012333
Myxococcota
Labilithrix luteola DSM 27648 [CP012333]
7913478
7913552
+
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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