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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145030 (37 seq.)
>C171046546
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
15371184
15371110
-
Pro
TGG
-
¡û
>WENV180015910
FSTQ01000392
[FSTQ] metagenome; soil
183
108
-
Pro
TGG
[ENA]
¢þ
>WENV180019804
FTCO01001081
[FTCO] metagenome; soil
417
491
+
Pro
TGG
[ENA]
¢þ
>WENV180027248
FTIX01014336
[FTIX] metagenome; soil
265
341
+
Pro
TGG
[ENA]
¢þ
>WENV180027865
FTIZ01180141
[FTIZ] metagenome; soil
421
347
-
Pro
TGG
[ENA]
¢þ
>WENV180028995
FTJI01001421
[FTJI] metagenome; soil
257
183
-
Pro
TGG
[ENA]
¢þ
>WENV180034519
FTKR01001428
[FTKR] metagenome; soil
257
183
-
Pro
TGG
[ENA]
¢þ
>WENV180247913
OBEQ010067980
[OBEQ] groundwater metagenome; groundwater
5404
5480
+
Pro
TGG
[ENA]
¢þ
>WENV180353749
OBLQ011011909
[OBLQ] soil metagenome; soil
120
46
-
Pro
TGG
[ENA]
¢þ
>WENV180695152
OCZS013105811
[OCZS] soil metagenome; soil
93
169
+
Pro
TGG
[ENA]
¢þ
>W141073135
ASRX01000054
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
39442
39518
+
Pro
TGG
[ENA]
¡û
>C08008957
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
2819226
2819150
-
Pro
TGG
[Ensembl]
¡û
>WENV183693140
ORMF012032318
[ORMF] groundwater metagenome; groundwater
407
331
-
Pro
TGG
[ENA]
¢þ
>WENV170003125
AGTN01233140
[AGTN] bioreactor metagenome; poplar biomass
39
115
+
Pro
TGG
[ENA]
¢þ
>WENV170564648
CZKU01000016
[CZKU] soil metagenome genome assembly CiPEHR-AK-2010-FBin.27, contig:; soil
5045
5121
+
Pro
TGG
[ENA]
¢þ
>WENV170634759
JAHE01057695
[JAHE] sediment metagenome; lake sediment
298
374
+
Pro
TGG
[ENA]
¢þ
>C181012526
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
3377463
3377387
-
Pro
TGG
-
¡û
>C191010049
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
2413845
2413770
-
Pro
TGG
-
¡û
>C191010106
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
3482245
3482170
-
Pro
TGG
-
¡û
>C151091977
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
8599205
8599281
+
Pro
TGG
-
¡û
>C131010793
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
3478953
3478877
-
Pro
TGG
[Ensembl]
¡û
>W1610520364
JELX01000027
Myxococcota
Sorangium cellulosum [JELX]
273
349
+
Pro
TGG
[ENA]
¡û
>W1610520457
JELY01003652
Myxococcota
Sorangium cellulosum [JELY]
956
880
-
Pro
TGG
[ENA]
¡û
>W1610520476
JELZ01000756
Myxococcota
Sorangium cellulosum [JELZ]
9210
9286
+
Pro
TGG
[ENA]
¡û
>W1610520554
JEMA01001159
Myxococcota
Sorangium cellulosum [JEMA]
8049
7973
-
Pro
TGG
[ENA]
¡û
>W1610520597
JEMB01002769
Myxococcota
Sorangium cellulosum [JEMB]
226
150
-
Pro
TGG
[ENA]
¡û
>W1610520611
JEMC01000175
Myxococcota
Sorangium cellulosum [JEMC]
274
198
-
Pro
TGG
[ENA]
¡û
>W1610520678
JEMD01001495
Myxococcota
Sorangium cellulosum [JEMD]
3242
3166
-
Pro
TGG
[ENA]
¡û
>W1610520737
JEME01001791
Myxococcota
Sorangium cellulosum [JEME]
3207
3131
-
Pro
TGG
[ENA]
¡û
>W1710615842
JELX01000027
Myxococcota
Sorangium cellulosum [JELX]
273
349
+
Pro
TGG
[ENA]
¡û
>W1710615935
JELY01003652
Myxococcota
Sorangium cellulosum [JELY]
956
880
-
Pro
TGG
[ENA]
¡û
>W1710615954
JELZ01000756
Myxococcota
Sorangium cellulosum [JELZ]
9210
9286
+
Pro
TGG
[ENA]
¡û
>W1710616032
JEMA01001159
Myxococcota
Sorangium cellulosum [JEMA]
8049
7973
-
Pro
TGG
[ENA]
¡û
>W1710616075
JEMB01002769
Myxococcota
Sorangium cellulosum [JEMB]
226
150
-
Pro
TGG
[ENA]
¡û
>W1710616089
JEMC01000175
Myxococcota
Sorangium cellulosum [JEMC]
274
198
-
Pro
TGG
[ENA]
¡û
>W1710616156
JEMD01001495
Myxococcota
Sorangium cellulosum [JEMD]
3242
3166
-
Pro
TGG
[ENA]
¡û
>W1710616215
JEME01001791
Myxococcota
Sorangium cellulosum [JEME]
3207
3131
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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