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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145036 (32 seq.)
>WENV180265222
OBEQ011643313
[OBEQ] groundwater metagenome; groundwater
615
539
-
Pro
CGG
[ENA]
¢þ
>W141073127
ASRX01000040
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
22908
22832
-
Pro
CGG
[ENA]
¡û
>WENV181193127
OEPS011496890
[OEPS] soil metagenome; soil
31
105
+
Pro
CGG
[ENA]
¢þ
>WENV181286462
OFGW01000022
[OFGW] soil metagenome; Clay
7626
7550
-
Pro
CGG
[ENA]
¢þ
>C08008912
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
890682
890756
+
Pro
CGG
[Ensembl]
¡û
>WENV183691505
ORMF011774180
[ORMF] groundwater metagenome; groundwater
1035
1111
+
Pro
CGG
[ENA]
¢þ
>WENV170564684
CZKU01000484
[CZKU] soil metagenome genome assembly CiPEHR-AK-2010-FBin.27, contig:; soil
15384
15308
-
Pro
CGG
[ENA]
¢þ
>WENV170634969
JAHE01154607
[JAHE] sediment metagenome; lake sediment
175
99
-
Pro
CGG
[ENA]
¢þ
>WENV170712782
LNFM01017594
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
838
764
-
Pro
CGG
[ENA]
¢þ
>WENV170993020
MWWB01158440
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
464
388
-
Pro
CGG
[ENA]
¢þ
>C181012482
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
1136103
1136177
+
Pro
CGG
-
¡û
>C191010011
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
921805
921881
+
Pro
CGG
-
¡û
>C191010062
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
1185095
1185170
+
Pro
CGG
-
¡û
>SRA1002139
SRR001308.269262
Metagenomic characterization of a wastewater treatment plant (SRP000180)
129
53
-
Pro
CGG
[SRA]
>C151091966
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
2939931
2940007
+
Pro
CGG
-
¡û
>C131010746
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
1210172
1210248
+
Pro
CGG
[Ensembl]
¡û
>W1610520370
JELX01000473
Myxococcota
Sorangium cellulosum [JELX]
1130
1206
+
Pro
CGG
[ENA]
¡û
>W1610520456
JELY01003627
Myxococcota
Sorangium cellulosum [JELY]
3402
3326
-
Pro
CGG
[ENA]
¡û
>W1610520504
JELZ01002471
Myxococcota
Sorangium cellulosum [JELZ]
2639
2715
+
Pro
CGG
[ENA]
¡û
>W1610520544
JEMA01000880
Myxococcota
Sorangium cellulosum [JEMA]
3216
3292
+
Pro
CGG
[ENA]
¡û
>W1610520585
JEMB01002533
Myxococcota
Sorangium cellulosum [JEMB]
2660
2736
+
Pro
CGG
[ENA]
¡û
>W1610520613
JEMC01000707
Myxococcota
Sorangium cellulosum [JEMC]
1134
1210
+
Pro
CGG
[ENA]
¡û
>W1610520699
JEMD01001907
Myxococcota
Sorangium cellulosum [JEMD]
3367
3443
+
Pro
CGG
[ENA]
¡û
>W1610520732
JEME01001287
Myxococcota
Sorangium cellulosum [JEME]
3207
3283
+
Pro
CGG
[ENA]
¡û
>W1710615848
JELX01000473
Myxococcota
Sorangium cellulosum [JELX]
1130
1206
+
Pro
CGG
[ENA]
¡û
>W1710615934
JELY01003627
Myxococcota
Sorangium cellulosum [JELY]
3402
3326
-
Pro
CGG
[ENA]
¡û
>W1710615982
JELZ01002471
Myxococcota
Sorangium cellulosum [JELZ]
2639
2715
+
Pro
CGG
[ENA]
¡û
>W1710616022
JEMA01000880
Myxococcota
Sorangium cellulosum [JEMA]
3216
3292
+
Pro
CGG
[ENA]
¡û
>W1710616063
JEMB01002533
Myxococcota
Sorangium cellulosum [JEMB]
2660
2736
+
Pro
CGG
[ENA]
¡û
>W1710616091
JEMC01000707
Myxococcota
Sorangium cellulosum [JEMC]
1134
1210
+
Pro
CGG
[ENA]
¡û
>W1710616177
JEMD01001907
Myxococcota
Sorangium cellulosum [JEMD]
3367
3443
+
Pro
CGG
[ENA]
¡û
>W1710616210
JEME01001287
Myxococcota
Sorangium cellulosum [JEME]
3207
3283
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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