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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145085 (7 seq.)
>WENV180028427
FTJA01355258
[FTJA] metagenome; soil
110
33
-
Arg
GCG
[ENA]
¡û
>WENV180256431
OBEQ010818991
[OBEQ] groundwater metagenome; groundwater
700
623
-
Arg
GCG
[ENA]
¡û
>WENV180327100
OBKT01000275
[OBKT] soil metagenome; soil
5232
5155
-
Arg
GCG
[ENA]
¡û
>WENV181185599
OELU01000188
[OELU] metagenome; 1998
357
434
+
Arg
GCG
[ENA]
¡û
>WENV183687961
ORMF011215735
[ORMF] groundwater metagenome; groundwater
4764
4687
-
Arg
GCG
[ENA]
¡û
>WENV183691578
ORMF011786626
[ORMF] groundwater metagenome; groundwater
238
161
-
Arg
GCG
[ENA]
¡û
>WENV077479
AAFX01045038
Soil microbial communities from Minnesota Farm
463
540
+
Arg
GCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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