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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145155 (44 seq.)
>W1710909642
LNQR01000057
Nitrospirota
Candidatus Magnetominusculus xianensis HCH-1 [LNQR]
54659
54583
-
Pro
TGG
[ENA]
¡û
>W1711414405
MGZL01000013
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
8212
8135
-
Pro
TGG
[ENA]
¡û
>W1711416572
MHDT01000006
Nitrospirota
Nitrospirae bacterium GWA2_46_11 [MHDT]
18124
18047
-
Pro
TGG
[ENA]
¡û
>W1711416639
MHDU01000063
Nitrospirota
Nitrospirae bacterium GWB2_47_37 [MHDU]
18138
18061
-
Pro
TGG
[ENA]
¡û
>W131228741
AUGE01000029
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
6672
6595
-
Pro
TGG
[ENA]
¡û
>C010259
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2619323
2619246
-
Pro
TGG
[Ensembl]
¡û
>w024792
AAZA01000018
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
89632
89711
+
Pro
TGG
[ENA]
¡û
>WENV180250461
OBEQ010285294
[OBEQ] groundwater metagenome; groundwater
3381
3304
-
Pro
TGG
[ENA]
¡û
>WENV180315131
OBKH01024139
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
199
122
-
Pro
TGG
[ENA]
¡û
>W08010633
ABRF01000005
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
94002
93928
-
Pro
TGG
[ENA]
¡û
>C08005192
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
1400055
1400132
+
Pro
TGG
[Ensembl]
¡û
>WENV183692544
ORMF011935910
[ORMF] groundwater metagenome; groundwater
4460
4383
-
Pro
TGG
[ENA]
¡û
>WENV183702239
PDVH01028249
[PDVH] alkali sediment metagenome; glacial lake sediment
674
599
-
Pro
TGG
[ENA]
¡û
>WENV170660512
JXWT01124264
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
332
409
+
Pro
TGG
[ENA]
¡û
>WENV170661833
JXWV01131305
[JXWV] soil metagenome; rice field; organic FYM Plot
180
103
-
Pro
TGG
[ENA]
¡û
>W09133646
ACPJ01000086
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
8244
8167
-
Pro
TGG
[ENA]
¡û
>W1910731126
MHDL01000035
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_02_39_17 [MHDL]
16635
16712
+
Pro
TGG
[ENA]
¡û
>W1910731361
MHEL01000029
Nitrospirota
Nitrospirae bacterium RBG_19FT_COMBO_42_15 [MHEL]
11156
11079
-
Pro
TGG
[ENA]
¡û
>C09106421
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3558418
3558341
-
Pro
TGG
[Ensembl]
¡û
>W2010145405
BLXX01000023
Thermodesulfobacteriota
Geomonas sp. Red330 [BLXX]
15943
15866
-
Pro
TGG
[ENA]
¡û
>W2010145460
BLXY01000017
Thermodesulfobacteriota
Geomonas sp. Red736 [BLXY]
37654
37731
+
Pro
TGG
[ENA]
¡û
>W2010145482
BLXZ01000003
Thermodesulfobacteriota
Geomonas sp. Red745 [BLXZ]
241316
241239
-
Pro
TGG
[ENA]
¡û
>W2010864670
MHDO01000015
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_12_39_16 [MHDO]
4356
4433
+
Pro
TGG
[ENA]
¡û
>W2010864791
MHEL01000029
Nitrospirota
Nitrospirae bacterium RBG_19FT_COMBO_42_15 [MHEL]
11156
11079
-
Pro
TGG
[ENA]
¡û
>W2011352707
RAHW01000007
Thermodesulfobacteriota
Geobacter sp. S43 [RAHW]
83603
83526
-
Pro
TGG
[ENA]
¡û
>W2011352721
RAHW01000011
Thermodesulfobacteriota
Geobacter sp. S43 [RAHW]
86985
86908
-
Pro
TGG
[ENA]
¡û
>W2011643719
SNNQ01000419
Nitrospirota
Nitrospirales bacterium LBB_01 [SNNQ]
159
84
-
Pro
TGG
[ENA]
¡û
>W2011680817
SRSC01000005
Thermodesulfobacteriota
Geobacter sp. Red111 [SRSC]
239342
239419
+
Pro
TGG
[ENA]
¡û
>W2011694023
SSYA01000003
Thermodesulfobacteriota
Geobacter sp. S62 [SSYA]
227638
227715
+
Pro
TGG
[ENA]
¡û
>W2110428408
JAEMHK010000007
Thermodesulfobacteriota
Geomonas propionica Red259 [JAEMHK]
13173
13250
+
Pro
TGG
[ENA]
¡û
>W2110428467
JAEMHL010000008
Thermodesulfobacteriota
Geomonas anaerohicana Red421 [JAEMHL]
15963
15886
-
Pro
TGG
[ENA]
¡û
>W2110617961
JAHLME010000005
Thermodesulfobacteriota
Geomonas azotofigens Red51 [JAHLME]
4161
4084
-
Pro
TGG
[ENA]
¡û
>W2110689902
JAINZN010000009
Thermodesulfobacteriota
Geomonas sp. RG17 [JAINZN]
55022
54945
-
Pro
TGG
[ENA]
¡û
>W2110689912
JAINZO010000001
Thermodesulfobacteriota
Geomonas sp. RG53 [JAINZO]
120440
120517
+
Pro
TGG
[ENA]
¡û
>C211008681
AP023213
Thermodesulfobacteriota
Geobacter bremensis R4 [AP023213]
3366981
3366904
-
Pro
TGG
-
¡û
>C211349351
CP076723
Thermodesulfobacteriota
Geomonas sp. RG10 [CP076723]
3261692
3261615
-
Pro
TGG
-
¡û
>C211349408
CP076724
Thermodesulfobacteriota
Geomonas sp. RG29 [CP076724]
3096976
3096899
-
Pro
TGG
-
¡û
>C211359116
CP077683
Thermodesulfobacteriota
Geomonas sp. RG2 [CP077683]
51337
51414
+
Pro
TGG
-
¡û
>C211359219
CP077684
Thermodesulfobacteriota
Geomonas sp. RF4 [CP077684]
3168065
3167988
-
Pro
TGG
-
¡û
>C211363303
CP078096
Thermodesulfobacteriota
Geomonas sp. RG3 [CP078096]
1684600
1684523
-
Pro
TGG
-
¡û
>C231369647
CP096574
Thermodesulfobacteriota
Geomonas paludis RG22 [CP096574]
1313933
1314010
+
Pro
TGG
-
¡û
>C11109564
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
1279975
1280052
+
Pro
TGG
[Ensembl]
¡û
>W1610768001
LNQR01000057
Nitrospirota
Candidatus Magnetominusculus xianensis HCH-1 [LNQR]
54659
54583
-
Pro
TGG
[ENA]
¡û
>W1710087152
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
293737
293814
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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