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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145155 (28 seq.)
>W1710893212
LNEN01000271
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
1833
1909
+
Ala
GGC
[ENA]
¡û
>W1710894202
LNFR01000025
Bacteroidota
Bacteroidetes bacterium OLB12 [LNFR]
32896
32820
-
Ala
GGC
[ENA]
¡û
>W131169926
ARFD01000011
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
10786
10709
-
Ala
GGC
[ENA]
¡û
>C171104439
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
3559063
3559139
+
Ala
GGC
-
¡û
>W131169910
ARFC01000022
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
18074
18150
+
Ala
GGC
[ENA]
¡û
>W131220025
ATZA01000026
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
59506
59580
+
Ala
GGC
[ENA]
¡û
>WENV180694210
OCZS012078959
[OCZS] soil metagenome; soil
157
83
-
Ala
GGC
[ENA]
¢þ
>WENV181193229
OEPS011638917
[OEPS] soil metagenome; soil
106
32
-
Ala
GGC
[ENA]
¢þ
>WENV183725481
PJQF01000137
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
12507
12433
-
Ala
GGC
[ENA]
¢þ
>WENV170711960
LNFM01008659
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7668
7592
-
Ala
GGC
[ENA]
¢þ
>WENV170713033
LNFM01022597
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5590
5514
-
Ala
GGC
[ENA]
¢þ
>WENV170714882
LNFM01111444
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
612
688
+
Ala
GGC
[ENA]
¢þ
>WENV170998626
MWWJ01061606
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
174
250
+
Ala
GGC
[ENA]
¢þ
>WENV171003863
NNBV01002683
[NNBV] plant metagenome; symbiotic tissue sample KVS11
2670
2746
+
Ala
GGC
[ENA]
¢þ
>C181113148
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
546142
546068
-
Ala
GGC
-
¡û
>W09109924
ABUR01000011
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
156622
156698
+
Ala
GGC
[ENA]
¡û
>W1910129042
BHXQ01000003
Bacteroidota
Chryseotalea sanaruensis Ys [BHXQ]
642535
642609
+
Ala
GGC
[ENA]
¡û
>W1911497262
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
509985
510059
+
Ala
GGC
[ENA]
¡û
>W1810364378
PVTE01000011
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
209368
209442
+
Ala
GGC
[ENA]
¡û
>W1810692104
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
2448556
2448482
-
Ala
GGC
[ENA]
¡û
>W1810701996
QMFY01000006
Bacteroidota
Pseudochryseolinea flava SDU1-6 [QMFY]
321723
321649
-
Ala
GGC
[ENA]
¡û
>C151068605
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
1692612
1692688
+
Ala
GGC
[Ensembl]
¡û
>C10111756
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
838530
838606
+
Ala
GGC
[Ensembl]
¡û
>C161003239
CP004371
Bacteroidota
Flammeovirgaceae bacterium 311 [CP004371]
3234796
3234870
+
Ala
GGC
[Ensembl]
¡û
>W1610753478
LNEN01000271
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
1833
1909
+
Ala
GGC
[ENA]
¡û
>W1610754468
LNFR01000025
Bacteroidota
Bacteroidetes bacterium OLB12 [LNFR]
32896
32820
-
Ala
GGC
[ENA]
¡û
>W1710558196
FOLQ01000006
Bacteroidota
Spirosoma endophyticum [FOLQ]
215218
215144
-
Ala
GGC
[ENA]
¡û
>W1710604249
FUZU01000005
Bacteroidota
Ohtaekwangia koreensis [FUZU]
324185
324109
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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