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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145157 (23 seq.)
>C171104454
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
1591141
1591067
-
His
GTG
-
¡û
>WENV180103486
OAPA01048795
[OAPA] marine metagenome; ENVO:00002010
275
200
-
His
GTG
[ENA]
¢þ
>WENV180377515
OBON01033556
[OBON] marine metagenome; sea water
283
208
-
His
GTG
[ENA]
¢þ
>WENV180378864
OBOO01182596
[OBOO] marine metagenome; ENVO 00002150
310
235
-
His
GTG
[ENA]
¢þ
>WENV170005986
AMQJ01010027
[AMQJ] sediment metagenome; subsurface aquifer sediment
6068
5992
-
His
GTG
[ENA]
¢þ
>WENV170342991
CETD01211115
[CETD] marine metagenome genome assembly TARA_110_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
125
51
-
His
GTG
[ENA]
¢þ
>WENV170523834
CEWG01277909
[CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
401
475
+
His
GTG
[ENA]
¢þ
>WENV170886438
MDTC01221322
[MDTC] marine metagenome; seawater
545
471
-
His
GTG
[ENA]
¢þ
>WENV170942760
MDTG01383829
[MDTG] marine metagenome; seawater
3791
3865
+
His
GTG
[ENA]
¢þ
>WENV170989792
MWVZ01104467
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
219
145
-
His
GTG
[ENA]
¢þ
>WENV170999117
MWWJ01241341
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
307
380
+
His
GTG
[ENA]
¢þ
>W09109921
ABUR01000010
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
106659
106735
+
His
GTG
[ENA]
¡û
>W1810628375
QICL01000002
Bacteroidota
Dysgonomonas alginatilytica DSM 100214 [QICL]
143156
143081
-
His
GTG
[ENA]
¡û
>W1810692097
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
5712165
5712090
-
His
GTG
[ENA]
¡û
>C151068614
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
6400138
6400212
+
His
GTG
[Ensembl]
¡û
>W1510019948
BBXL01000001
Bacteroidota
Dysgonomonas macrotermitis JCM 19375 [BBXL]
578045
577971
-
His
GTG
[ENA]
¡û
>C10111767
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
6560445
6560521
+
His
GTG
[Ensembl]
¡û
>C161046274
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1235619
1235694
+
His
GTG
-
¡û
>C161046276
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1235903
1235979
+
His
GTG
-
¡û
>C161046278
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1236184
1236260
+
His
GTG
-
¡û
>C161046280
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1236465
1236541
+
His
GTG
-
¡û
>W1610626064
LIBP01000003
Bacteroidota
Cryomorphaceae bacterium BACL18 MAG-120924-bin36 [LIBP]
11484
11408
-
His
GTG
[ENA]
¡û
>W1710757191
LIBP01000003
Bacteroidota
Cryomorphaceae bacterium BACL18 MAG-120924-bin36 [LIBP]
11484
11408
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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