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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145158 (19 seq.)
>W1711504012
MKUD01000058
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
141808
141882
+
Pro
GGG
[ENA]
¡û
>C171030735
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
4408415
4408489
+
Pro
GGG
-
¡û
>C171037537
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
2873491
2873567
+
Pro
GGG
-
¡û
>C171104419
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
171540
171466
-
Pro
GGG
-
¡û
>C171104427
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
870546
870620
+
Pro
GGG
-
¡û
>W131169815
ARFA01000017
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
40856
40782
-
Pro
GGG
[ENA]
¡û
>W131169884
ARFC01000001
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
264987
264913
-
Pro
GGG
[ENA]
¡û
>W131169923
ARFD01000009
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
55452
55526
+
Pro
GGG
[ENA]
¡û
>W131181675
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
3682274
3682200
-
Pro
GGG
[ENA]
¡û
>WENV170996507
MWWF01301215
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
158
232
+
Pro
GGG
[ENA]
¢þ
>C181113144
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
2710846
2710772
-
Pro
GGG
-
¡û
>W09109919
ABUR01000008
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
83397
83473
+
Pro
GGG
[ENA]
¡û
>W1911497285
OCNH01000004
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
457566
457640
+
Pro
GGG
[ENA]
¡û
>W1810364367
PVTE01000005
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
126893
126819
-
Pro
GGG
[ENA]
¡û
>W1810692072
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
5143339
5143413
+
Pro
GGG
[ENA]
¡û
>C151068616
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
6979466
6979390
-
Pro
GGG
[Ensembl]
¡û
>C10111766
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
6218820
6218896
+
Pro
GGG
[Ensembl]
¡û
>C161104960
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
1256115
1256191
+
Pro
GGG
[Ensembl]
¡û
>W1710558190
FOLQ01000003
Bacteroidota
Spirosoma endophyticum [FOLQ]
202572
202498
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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