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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145159 (23 seq.)
>W1711504024
MKUD01000086
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
72426
72350
-
Pro
CGG
[ENA]
¡û
>W1711769476
MVEC01000024
Bacteroidota
Spirosoma sp. 209 [MVEC]
26188
26264
+
Pro
CGG
[ENA]
¡û
>C171030736
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
4801294
4801368
+
Pro
CGG
-
¡û
>C171104420
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
14787
14711
-
Pro
CGG
-
¡û
>C171104455
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
1156766
1156692
-
Pro
CGG
-
¡û
>W131169816
ARFA01000018
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
128851
128927
+
Pro
CGG
[ENA]
¡û
>W131181679
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
3186343
3186269
-
Pro
CGG
[ENA]
¡û
>WENV180592191
OCOV01217691
[OCOV] marine metagenome; ENVO:01000301
371
295
-
Pro
CGG
[ENA]
¢þ
>WENV181307543
OFIQ01020842
[OFIQ] marine metagenome; seawater
448
374
-
Pro
CGG
[ENA]
¢þ
>W141242789
CAIT01000009
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
1882615
1882541
-
Pro
CGG
[ENA]
¡û
>WENV170012203
APMI01135372
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
370
294
-
Pro
CGG
[ENA]
¢þ
>WENV170659728
JXWR01053685
[JXWR] soil metagenome; rice field; ambient CO2
178
102
-
Pro
CGG
[ENA]
¢þ
>WENV170983814
MWVV01097075
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
161
235
+
Pro
CGG
[ENA]
¢þ
>W09109922
ABUR01000010
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
204414
204488
+
Pro
CGG
[ENA]
¡û
>W1911497296
OCNH01000006
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
67648
67574
-
Pro
CGG
[ENA]
¡û
>W1911766829
QXED01000012
Bacteroidota
Fibrisoma montanum HYT19 [QXED]
74774
74700
-
Pro
CGG
[ENA]
¡û
>W1810364387
PVTE01000021
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
47596
47522
-
Pro
CGG
[ENA]
¡û
>W1810692098
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
5459120
5459044
-
Pro
CGG
[ENA]
¡û
>W1810745160
QOWE01000049
Bacteroidota
Larkinella punicea zzj9 [QOWE]
199
273
+
Pro
CGG
[ENA]
¡û
>C151068617
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
6682901
6682827
-
Pro
CGG
[Ensembl]
¡û
>C10111768
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
6658200
6658274
+
Pro
CGG
[Ensembl]
¡û
>C161105015
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
626759
626683
-
Pro
CGG
[Ensembl]
¡û
>W1710558191
FOLQ01000003
Bacteroidota
Spirosoma endophyticum [FOLQ]
68488
68414
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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