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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145194 (47 seq.)
>W1711081625
LSSV01000025
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
82515
82439
-
Met
CAT
[ENA]
¡û
>W1711082324
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
230678
230754
+
Met
CAT
[ENA]
¡û
>W1711139757
LVFF01000051
Actinomycetota
Dietzia maris [LVFF]
107934
108010
+
Met
CAT
[ENA]
¡û
>W1711187066
LWOT01000042
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
3084
3160
+
Met
CAT
[ENA]
¡û
>W1711187617
LWPP01000574
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
4647
4571
-
Met
CAT
[ENA]
¡û
>W1711351221
MDCG01000081
Actinomycetota
Dietzia alimentaria [MDCG]
1859
1783
-
Met
CAT
[ENA]
¡û
>W1711492387
MKKI01000042
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
204106
204182
+
Met
CAT
[ENA]
¡û
>W1711717102
MTGK01000012
Actinomycetota
Corynebacterium jeikeium [MTGK]
24464
24540
+
Met
CAT
[ENA]
¡û
>W131159321
AQUY01000002
Actinomycetota
Corynebacterium ulceribovis DSM 45146 [AQUY]
351744
351820
+
Met
CAT
[ENA]
¡û
>W131099098
AOSR01000013
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
134670
134594
-
Met
CAT
[ENA]
¡û
>W131159162
AQUV01000001
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
186571
186497
-
Met
CAT
[ENA]
¡û
>C005934
CR931997
Actinomycetota
Corynebacterium jeikeium K411 K411 [CR931997]
772484
772560
+
Met
CAT
[Ensembl]
¡û
>C171001820
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
962972
963048
+
Met
CAT
-
¡û
>C171098503
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
1049565
1049641
+
Met
CAT
-
¡û
>WENV183724080
PEHZ01030156
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
93
20
-
Ile2
CAT
[ENA]
¢þ
>W141453185
JFCM01000021
Actinomycetota
Corynebacterium jeikeium [JFCM]
56760
56684
-
Met
CAT
[ENA]
¡û
>W141453316
JFCO01000075
Actinomycetota
Corynebacterium jeikeium [JFCO]
23191
23115
-
Met
CAT
[ENA]
¡û
>C181017345
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
1352801
1352875
+
Met
CAT
-
¡û
>C181017393
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1325689
1325764
+
Met
CAT
-
¡û
>C181107047
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
1301332
1301408
+
Met
CAT
-
¡û
>C181148321
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
2507876
2507951
+
Met
CAT
-
¡û
>C181214778
LS483459
Actinomycetota
Corynebacterium jeikeium NCTC11914 [LS483459]
1904954
1904880
-
Met
CAT
-
¡û
>C191209542
LR134377
Actinomycetota
Corynebacterium kutscheri NCTC949 [LR134377]
1086881
1086807
-
Met
CAT
-
¡û
>C191209718
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
1403195
1403269
+
Met
CAT
-
¡û
>C191210900
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
2134582
2134508
-
Met
CAT
-
¡û
>W1911279023
NTGA01000029
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
48673
48597
-
Met
CAT
[ENA]
¡û
>W1911422562
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
1063787
1063711
-
Met
CAT
[ENA]
¡û
>W1810463947
PZZY01000005
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
149007
149082
+
Met
CAT
[ENA]
¡û
>W1810580885
QETM01000068
Actinomycetota
Dietzia maris AMT [QETM]
14442
14367
-
Met
CAT
[ENA]
¡û
>W1810722000
QNTT01000014
Actinomycetota
Dietzia maris SST1 [QNTT]
2960
3036
+
Met
CAT
[ENA]
¡û
>C151013290
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
2177586
2177660
+
Met
CAT
[Ensembl]
¡û
>C151079770
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
1992286
1992362
+
Met
CAT
[Ensembl]
¡û
>C151084494
CP011546
Actinomycetota
Corynebacterium uterequi DSM 45634 [CP011546]
1666960
1667036
+
Met
CAT
[Ensembl]
¡û
>W10106867
ACYW01000027
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
11228
11152
-
Met
CAT
[ENA]
¡û
>W10116387
ADNS01000031
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
85048
84972
-
Met
CAT
[ENA]
¡û
>W11109156
ACYW01000027
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
11228
11152
-
Met
CAT
[ENA]
¡û
>W11121056
ADNS01000031
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
85048
84972
-
Met
CAT
[ENA]
¡û
>W11139500
AEKG01000038
Actinomycetota
Dietzia cinnamea P4 [AEKG]
2747
2671
-
Met
CAT
[ENA]
¡û
>W11178759
AGFF01000008
Actinomycetota
Dietzia alimentaria 72 [AGFF]
103406
103482
+
Met
CAT
[ENA]
¡û
>W1610069384
BCSL01000003
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
49838
49914
+
Met
CAT
[ENA]
¡û
>W1610069925
BCSW01000046
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
2775
2699
-
Met
CAT
[ENA]
¡û
>W1610920460
LSSV01000025
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
82515
82439
-
Met
CAT
[ENA]
¡û
>W1610921109
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
230678
230754
+
Met
CAT
[ENA]
¡û
>W1610950765
LVFF01000051
Actinomycetota
Dietzia maris [LVFF]
107934
108010
+
Met
CAT
[ENA]
¡û
>W1710066757
BCSL01000003
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
49838
49914
+
Met
CAT
[ENA]
¡û
>W1710067298
BCSW01000046
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
2775
2699
-
Met
CAT
[ENA]
¡û
>W1710563020
FOPJ01000002
Actinomycetota
Corynebacterium spheniscorum [FOPJ]
259240
259164
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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