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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145209 (27 seq.)
>WENV180019926
FTCS01001826
[FTCS] metagenome; soil
86
160
+
Ile2
CAT
[ENA]
¢þ
>WENV180020185
FTCX01000268
[FTCX] metagenome; soil
1379
1305
-
Ile2
CAT
[ENA]
¢þ
>WENV181286612
OFGW01010655
[OFGW] soil metagenome; Clay
361
287
-
Ile2
CAT
[ENA]
¢þ
>WENV181294615
OFHH01016508
[OFHH] soil metagenome; Clay
883
807
-
Ile2
CAT
[ENA]
¢þ
>C08008948
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
5270640
5270564
-
Met
CAT
[Ensembl]
¡û
>C181012517
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
6207787
6207713
-
Met
CAT
-
¡û
>C191010037
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
4610220
4610146
-
Met
CAT
-
¡û
>C191010097
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
6475516
6475442
-
Met
CAT
-
¡û
>C151092015
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
6800263
6800187
-
Met
CAT
-
¡û
>C151093448
CP012333
Myxococcota
Labilithrix luteola DSM 27648 [CP012333]
7973708
7973782
+
Met
CAT
-
¡û
>C131010785
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
6410908
6410832
-
Met
CAT
[Ensembl]
¡û
>W1610520400
JELX01003176
Myxococcota
Sorangium cellulosum [JELX]
1923
1847
-
Met
CAT
[ENA]
¡û
>W1610520437
JELY01001963
Myxococcota
Sorangium cellulosum [JELY]
93
169
+
Met
CAT
[ENA]
¡û
>W1610520498
JELZ01002158
Myxococcota
Sorangium cellulosum [JELZ]
1929
1853
-
Met
CAT
[ENA]
¡û
>W1610520550
JEMA01001071
Myxococcota
Sorangium cellulosum [JEMA]
6386
6310
-
Met
CAT
[ENA]
¡û
>W1610520602
JEMB01002941
Myxococcota
Sorangium cellulosum [JEMB]
5327
5251
-
Met
CAT
[ENA]
¡û
>W1610520644
JEMC01002909
Myxococcota
Sorangium cellulosum [JEMC]
914
990
+
Met
CAT
[ENA]
¡û
>W1610520668
JEMD01001193
Myxococcota
Sorangium cellulosum [JEMD]
1994
1918
-
Met
CAT
[ENA]
¡û
>W1610520749
JEME01002439
Myxococcota
Sorangium cellulosum [JEME]
6754
6678
-
Met
CAT
[ENA]
¡û
>W1710615878
JELX01003176
Myxococcota
Sorangium cellulosum [JELX]
1923
1847
-
Met
CAT
[ENA]
¡û
>W1710615915
JELY01001963
Myxococcota
Sorangium cellulosum [JELY]
93
169
+
Met
CAT
[ENA]
¡û
>W1710615976
JELZ01002158
Myxococcota
Sorangium cellulosum [JELZ]
1929
1853
-
Met
CAT
[ENA]
¡û
>W1710616028
JEMA01001071
Myxococcota
Sorangium cellulosum [JEMA]
6386
6310
-
Met
CAT
[ENA]
¡û
>W1710616080
JEMB01002941
Myxococcota
Sorangium cellulosum [JEMB]
5327
5251
-
Met
CAT
[ENA]
¡û
>W1710616122
JEMC01002909
Myxococcota
Sorangium cellulosum [JEMC]
914
990
+
Met
CAT
[ENA]
¡û
>W1710616146
JEMD01001193
Myxococcota
Sorangium cellulosum [JEMD]
1994
1918
-
Met
CAT
[ENA]
¡û
>W1710616227
JEME01002439
Myxococcota
Sorangium cellulosum [JEME]
6754
6678
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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