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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145216 (60 seq.)
>W1711283069
LZOF01000036
Spirochaetota
Brachyspira hampsonii [LZOF]
26828
26755
-
Met
CAT
[ENA]
¡û
>W1711283095
LZOG01000094
Spirochaetota
Brachyspira hampsonii [LZOG]
13564
13637
+
Met
CAT
[ENA]
¡û
>W1711307472
MAOX01000002
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
38536
38463
-
Met
CAT
[ENA]
¡û
>W1711307529
MAOY01000018
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
23270
23343
+
Met
CAT
[ENA]
¡û
>W1711351556
MDCO01000006
Spirochaetota
Brachyspira hampsonii [MDCO]
33014
32941
-
Met
CAT
[ENA]
¡û
>W1711422520
MIBC01000074
Spirochaetota
Spirochaetes bacterium GWF1_41_5 [MIBC]
4655
4728
+
Met
CAT
[ENA]
¡û
>W1711507057
MKXF01000033
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
7274
7201
-
Met
CAT
[ENA]
¡û
>W131093640
AOMM01000118
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
4999
5072
+
Met
CAT
[ENA]
¡û
>W131182387
ARQI01000106
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
6937
6864
-
Met
CAT
[ENA]
¡û
>W131184491
ARSY01000023
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
10516
10589
+
Met
CAT
[ENA]
¡û
>WENV180116954
OARB01000368
[OARB] human gut metagenome; ENVO:feces
1319
1393
+
Ile2
CAT
[ENA]
¢þ
>WENV180117107
OARC01026446
[OARC] human gut metagenome; ENVO:feces
129
56
-
Ile2
CAT
[ENA]
¢þ
>WENV180117721
OARM01000019
[OARM] human gut metagenome; ENVO:feces
51668
51594
-
Ile2
CAT
[ENA]
¢þ
>W141037624
ALNZ01000007
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
52347
52274
-
Met
CAT
[ENA]
¡û
>WENV180404839
OBSA01063551
[OBSA] human gut metagenome; ENVO:feces
112
185
+
Ile2
CAT
[ENA]
¢þ
>WENV181665888
OGOJ01008234
[OGOJ] human gut metagenome; faeces
6
79
+
Ile2
CAT
[ENA]
¢þ
>WENV181704901
OGPK01001432
[OGPK] human gut metagenome; faeces
15471
15398
-
Ile2
CAT
[ENA]
¢þ
>W141275739
JADF01000019
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
54741
54815
+
Met
CAT
[ENA]
¡û
>WENV183384789
OLYN01013910
[OLYN] human gut metagenome; feces
1753
1826
+
Ile2
CAT
[ENA]
¢þ
>WENV183423726
OMBG01006219
[OMBG] human gut metagenome; feces
923
996
+
Ile2
CAT
[ENA]
¢þ
>WENV183447400
OMCS01006531
[OMCS] human gut metagenome; feces
601
674
+
Ile2
CAT
[ENA]
¢þ
>WENV183640733
OQVL01009650
[OQVL] human gut metagenome; human gut
336
263
-
Ile2
CAT
[ENA]
¢þ
>WENV170785306
MDSP01014010
[MDSP] gut metagenome; Stomach gut content
394
467
+
Met
CAT
[ENA]
¢þ
>WENV170785589
MDSP01144744
[MDSP] gut metagenome; Stomach gut content
484
411
-
Met
CAT
[ENA]
¢þ
>WENV170785676
MDSP01257171
[MDSP] gut metagenome; Stomach gut content
316
243
-
Met
CAT
[ENA]
¢þ
>C181038066
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
1845445
1845518
+
Met
CAT
-
¡û
>C191016995
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1711619
1711546
-
Met
CAT
-
¡û
>W09108428
ABTG01000004
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
118361
118434
+
Met
CAT
[ENA]
¡û
>W1910000031
AFQM01000047
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
8452
8526
+
Met
CAT
[ENA]
¡û
>W1910569145
JJMJ01000144
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
12116
12043
-
Met
CAT
[ENA]
¡û
>W1910569194
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
190439
190512
+
Met
CAT
[ENA]
¡û
>W1910574888
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
2161535
2161462
-
Met
CAT
[ENA]
¡û
>C09102337
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
2089817
2089890
+
Met
CAT
[Ensembl]
¡û
>C10101941
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1649299
1649372
+
Met
CAT
[Ensembl]
¡û
>C10101974
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1169167
1169241
+
Met
CAT
[Ensembl]
¡û
>C11103134
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
54349
54276
-
Met
CAT
[Ensembl]
¡û
>W1510641521
CVLB01000003
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
276437
276510
+
Met
CAT
[ENA]
¡û
>W1511506932
JXNA01000005
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
23087
23014
-
Met
CAT
[ENA]
¡û
>W1511506991
JXNB01000107
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
120605
120678
+
Met
CAT
[ENA]
¡û
>W1511507006
JXNC01000019
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
25567
25494
-
Met
CAT
[ENA]
¡û
>W1511507047
JXND01000049
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
35814
35741
-
Met
CAT
[ENA]
¡û
>W1511507063
JXNE01000037
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
22773
22846
+
Met
CAT
[ENA]
¡û
>W1511507093
JXNF01000019
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
36711
36638
-
Met
CAT
[ENA]
¡û
>W1511507138
JXNG01000039
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
6720
6647
-
Met
CAT
[ENA]
¡û
>W1511507164
JXNH01000045
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
38546
38473
-
Met
CAT
[ENA]
¡û
>W1511507192
JXNI01000026
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
33800
33727
-
Met
CAT
[ENA]
¡û
>W1511507225
JXNJ01000013
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
50802
50729
-
Met
CAT
[ENA]
¡û
>W1511507247
JXNK01000001
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
68956
69029
+
Met
CAT
[ENA]
¡û
>W1511507291
JXNL01000041
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
18408
18335
-
Met
CAT
[ENA]
¡û
>W1511507311
JXNM01000003
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
26676
26603
-
Met
CAT
[ENA]
¡û
>W1511507354
JXNN01000022
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
38133
38060
-
Met
CAT
[ENA]
¡û
>W1511507386
JXNO01000022
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
125775
125848
+
Met
CAT
[ENA]
¡û
>W1511507426
JXNP01000044
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
38473
38400
-
Met
CAT
[ENA]
¡û
>W1511507466
JXNQ01000067
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
9161
9234
+
Met
CAT
[ENA]
¡û
>W1511507470
JXNR01000001
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
38584
38511
-
Met
CAT
[ENA]
¡û
>W1511507511
JXNS01000031
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
6137
6064
-
Met
CAT
[ENA]
¡û
>C161092141
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1626829
1626756
-
Met
CAT
[Ensembl]
¡û
>C131001496
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
2048406
2048332
-
Met
CAT
[Ensembl]
¡û
>C131003842
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
271230
271156
-
Met
CAT
[Ensembl]
¡û
>C131019662
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2653592
2653666
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK