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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145269 (12 seq.)
>W1711416750
MHDY01000247
Nitrospirota
Nitrospirae bacterium GWC2_56_14 [MHDY]
7655
7578
-
Glu
TTC
[ENA]
¡û
>W1711416830
MHEA01000212
Nitrospirota
Nitrospirae bacterium GWC2_57_9 [MHEA]
21672
21749
+
Glu
TTC
[ENA]
¡û
>WENV180695534
OCZS013599274
[OCZS] soil metagenome; soil
116
39
-
Glu
TTC
[ENA]
¡û
>WENV181286461
OFGW01000019
[OFGW] soil metagenome; Clay
327
250
-
Glu
TTC
[ENA]
¡û
>WENV181292685
OFHF01005985
[OFHF] soil metagenome; Clay
756
679
-
Glu
TTC
[ENA]
¡û
>WENV181293146
OFHG01000115
[OFHG] soil metagenome; Clay
26638
26715
+
Glu
TTC
[ENA]
¡û
>WENV170008116
AMZC01002126
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1171
1094
-
Glu
TTC
[ENA]
¡û
>WENV170573997
FLYL01063001
[FLYL] hot springs metagenome; Sediment
227
304
+
Glu
TTC
[ENA]
¡û
>WENV170958582
MKWU01001409
[MKWU] sponge metagenome;
16597
16520
-
Glu
TTC
[ENA]
¡û
>WENV170959528
MKWU01005668
[MKWU] sponge metagenome;
11187
11110
-
Glu
TTC
[ENA]
¡û
>SRA1002978
SRR002326.132010
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
205
281
+
Glu
TTC
[SRA]
>C211181144
CP063849
Acidobacteriota
Paludibaculum fermentans P105 [CP063849]
5340357
5340434
+
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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