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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145315 (13 seq.)
>W1710799007
LJUF01000008
Planctomycetota
Phycisphaerae bacterium SM23_33 [LJUF]
20364
20439
+
Pro
CGG
[ENA]
¡û
>W1711421430
MHYL01000125
Planctomycetota
Planctomycetes bacterium RBG_16_59_8 [MHYL]
6480
6554
+
Pro
CGG
[ENA]
¡û
>W1711421473
MHYN01000171
Planctomycetota
Planctomycetes bacterium RBG_16_64_12 [MHYN]
9466
9543
+
Pro
CGG
[ENA]
¡û
>WENV180298311
OBJA01268798
[OBJA] soil metagenome; sediment, water from around vicinity
110
33
-
Pro
CGG
[ENA]
¡û
>WENV180298589
OBJA01458372
[OBJA] soil metagenome; sediment, water from around vicinity
83
9
-
Pro
CGG
[ENA]
¡û
>WENV183514303
OMKS01015639
[OMKS] sediment metagenome; hot spring sediment
1314
1239
-
Pro
CGG
[ENA]
¡û
>WENV183809838
PVBE011423717
[PVBE] marine metagenome; water
6136
6059
-
Pro
CGG
[ENA]
¡û
>WENV170017065
BARS01045691
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
231
155
-
Pro
CGG
[ENA]
¡û
>WENV170852934
MDTA01159990
[MDTA] marine metagenome; seawater
45979
46056
+
Pro
CGG
[ENA]
¡û
>WENV170940095
MDTG01337380
[MDTG] marine metagenome; seawater
37602
37679
+
Pro
CGG
[ENA]
¡û
>WENV170980337
MTKZ01133965
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3272
3198
-
Pro
CGG
[ENA]
¡û
>SRA1036076
SRR035089.439180
454 Sequencing (SRP001810)
315
240
-
Pro
CGG
[SRA]
>W1610662964
LJUF01000008
Planctomycetota
Phycisphaerae bacterium SM23_33 [LJUF]
20364
20439
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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