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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145348 (100 seq.)
>W1710944412
LOQS01000038
Actinomycetota
Corynebacterium glutamicum [LOQS]
244738
244662
-
Leu
CAA
[ENA]
¡û
>W1710944454
LOQT01000027
Actinomycetota
Corynebacterium glutamicum [LOQT]
62676
62752
+
Leu
CAA
[ENA]
¡û
>W1710944479
LOQV01000006
Actinomycetota
Corynebacterium glutamicum [LOQV]
12853
12777
-
Leu
CAA
[ENA]
¡û
>W1710944576
LOQW01000020
Actinomycetota
Corynebacterium glutamicum [LOQW]
62610
62686
+
Leu
CAA
[ENA]
¡û
>W1710944636
LOQX01000025
Actinomycetota
Corynebacterium glutamicum [LOQX]
40671
40595
-
Leu
CAA
[ENA]
¡û
>W1710944673
LOQY01000048
Actinomycetota
Corynebacterium glutamicum [LOQY]
60615
60691
+
Leu
CAA
[ENA]
¡û
>W1711093777
LTFH01000064
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
58404
58328
-
Leu
CAA
[ENA]
¡û
>W1711094353
LTFV01000067
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
58467
58391
-
Leu
CAA
[ENA]
¡û
>W1711094404
LTFW01000086
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
149241
149165
-
Leu
CAA
[ENA]
¡û
>W1711094429
LTFX01000031
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
61126
61050
-
Leu
CAA
[ENA]
¡û
>W1711094932
LTGK01000001
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
35995
35919
-
Leu
CAA
[ENA]
¡û
>W1711095270
LTGR01000006
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
44470
44546
+
Leu
CAA
[ENA]
¡û
>W1711096006
LTHJ01000041
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
58455
58379
-
Leu
CAA
[ENA]
¡û
>W1711097226
LTIM01000009
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
23186
23110
-
Leu
CAA
[ENA]
¡û
>W1711098662
LTJU01000018
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
58396
58320
-
Leu
CAA
[ENA]
¡û
>W1711098993
LTKC01000046
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
60900
60824
-
Leu
CAA
[ENA]
¡û
>W1711099718
LTKS01000044
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
31941
31865
-
Leu
CAA
[ENA]
¡û
>W1711099772
LTKT01000030
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
140945
140869
-
Leu
CAA
[ENA]
¡û
>W1711106090
LTRL01000054
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
41111
41187
+
Leu
CAA
[ENA]
¡û
>W1711106218
LTRQ01000027
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
61107
61031
-
Leu
CAA
[ENA]
¡û
>W1711106928
LTSH01000098
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
61175
61099
-
Leu
CAA
[ENA]
¡û
>W1711108146
LTTL01000017
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
4049
3973
-
Leu
CAA
[ENA]
¡û
>W1711108553
LTTW01000014
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
44945
45021
+
Leu
CAA
[ENA]
¡û
>W1711108701
LTTZ01000042
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
7741
7817
+
Leu
CAA
[ENA]
¡û
>W1711109282
LTUN01000031
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
16549
16625
+
Leu
CAA
[ENA]
¡û
>W1711109492
LTUR01000097
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
140523
140447
-
Leu
CAA
[ENA]
¡û
>W1711109785
LTUY01000040
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
140877
140801
-
Leu
CAA
[ENA]
¡û
>W1711110597
LTVS01000005
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
44736
44812
+
Leu
CAA
[ENA]
¡û
>W1711110982
LTWA01000094
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
44659
44735
+
Leu
CAA
[ENA]
¡û
>W1711111645
LTWQ01000063
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
58469
58393
-
Leu
CAA
[ENA]
¡û
>W1711112887
LTXU01000112
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
32042
31966
-
Leu
CAA
[ENA]
¡û
>W1711186567
LWOI01000034
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
43456
43532
+
Leu
CAA
[ENA]
¡û
>W1711186694
LWOK01000031
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
144482
144406
-
Leu
CAA
[ENA]
¡û
>W1711188291
LWQH01000080
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
60897
60821
-
Leu
CAA
[ENA]
¡û
>W1711510277
MLAL01000036
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
74617
74693
+
Leu
CAA
[ENA]
¡û
>C171001827
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
1626263
1626339
+
Leu
CAA
-
¡û
>C171074436
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
1560421
1560345
-
Leu
CAA
-
¡û
>C171098510
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
1712854
1712930
+
Leu
CAA
-
¡û
>C171111087
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
1318990
1319066
+
Leu
CAA
-
¡û
>W131156419
AQPS01000033
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
81508
81432
-
Leu
CAA
[ENA]
¡û
>W131215671
ATVF01000002
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
62824
62900
+
Leu
CAA
[ENA]
¡û
>C005709
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
1413641
1413565
-
Leu
CAA
[Ensembl]
¡û
>C005769
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
1415108
1415032
-
Leu
CAA
[Ensembl]
¡û
>C005827
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
1557450
1557374
-
Leu
CAA
[Ensembl]
¡û
>W141026592
AKXP01000019
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
81509
81433
-
Leu
CAA
[ENA]
¡û
>WENV180504717
OCAN01048177
[OCAN] human gut metagenome; faeces
134
210
+
Leu
CAA
[ENA]
¢þ
>WENV181082445
OEAU01003136
[OEAU] human metagenome; G_DNA_Anterior nares
170
96
-
Leu
CAA
[ENA]
¢þ
>WENV181326327
OFLL01000112
[OFLL] metagenome; faeces
22385
22311
-
Leu
CAA
[ENA]
¢þ
>WENV182629142
OJKR01010099
[OJKR] metagenome; surface
251
177
-
Leu
CAA
[ENA]
¢þ
>WENV182636391
OJKZ01005474
[OJKZ] metagenome; surface
1212
1286
+
Leu
CAA
[ENA]
¢þ
>WENV182640516
OJLB01023979
[OJLB] metagenome; surface
91
17
-
Leu
CAA
[ENA]
¢þ
>WENV182641838
OJLK01002657
[OJLK] metagenome; surface
844
770
-
Leu
CAA
[ENA]
¢þ
>WENV182642085
OJLL01000579
[OJLL] metagenome; surface
2357
2283
-
Leu
CAA
[ENA]
¢þ
>WENV182643392
OJLU01005873
[OJLU] metagenome; surface
124
50
-
Leu
CAA
[ENA]
¢þ
>WENV182643990
OJLW01004577
[OJLW] metagenome; surface
3404
3330
-
Leu
CAA
[ENA]
¢þ
>WENV182645035
OJLY01001648
[OJLY] metagenome; surface
3400
3326
-
Leu
CAA
[ENA]
¢þ
>WENV182645052
OJLY01001851
[OJLY] metagenome; surface
4267
4341
+
Leu
CAA
[ENA]
¢þ
>WENV182645808
OJLZ01003802
[OJLZ] metagenome; surface
1111
1185
+
Leu
CAA
[ENA]
¢þ
>WENV182646484
OJMA01108008
[OJMA] metagenome; surface
461
387
-
Leu
CAA
[ENA]
¢þ
>WENV182671703
OJNM01001416
[OJNM] metagenome; surface
5736
5810
+
Leu
CAA
[ENA]
¢þ
>C181001636
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
1545826
1545750
-
Leu
CAA
-
¡û
>C181002250
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
1550479
1550403
-
Leu
CAA
-
¡û
>C181029658
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
1245756
1245680
-
Leu
CAA
-
¡û
>C181064202
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
1099485
1099409
-
Leu
CAA
-
¡û
>C181070001
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
1481639
1481563
-
Leu
CAA
-
¡û
>C181118459
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
1415373
1415297
-
Leu
CAA
-
¡û
>C181118508
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
2194788
2194712
-
Leu
CAA
-
¡û
>W09127854
ACLH01000081
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
22277
22353
+
Leu
CAA
[ENA]
¡û
>W1910001243
APJJ01000017
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
81829
81753
-
Leu
CAA
[ENA]
¡û
>W1910374178
FUIB01000015
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
50866
50790
-
Leu
CAA
[ENA]
¡û
>C141004174
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
1403572
1403496
-
Leu
CAA
[Ensembl]
¡û
>W1910573034
JOLA01000032
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
64667
64743
+
Leu
CAA
[ENA]
¡û
>C09102738
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
1533966
1534042
+
Leu
CAA
[Ensembl]
¡û
>W1911596667
PNHI01000012
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
32884
32810
-
Leu
CAA
[ENA]
¡û
>W1810187545
PKHR01000001
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
664240
664166
-
Leu
CAA
[ENA]
¡û
>C151033029
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
1503759
1503683
-
Leu
CAA
[Ensembl]
¡û
>C151033086
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
1472942
1472866
-
Leu
CAA
[Ensembl]
¡û
>C151045708
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
1339989
1339913
-
Leu
CAA
-
¡û
>C151069925
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
1482906
1482830
-
Leu
CAA
[Ensembl]
¡û
>C151073119
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
1584601
1584677
+
Leu
CAA
[Ensembl]
¡û
>C151079636
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
1488804
1488728
-
Leu
CAA
[Ensembl]
¡û
>W10116384
ADNS01000027
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
266825
266749
-
Leu
CAA
[ENA]
¡û
>W11121053
ADNS01000027
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
266825
266749
-
Leu
CAA
[ENA]
¡û
>W1511438543
JUMN01000017
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
31242
31166
-
Leu
CAA
[ENA]
¡û
>W1511500686
JXBH01000016
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
17915
17839
-
Leu
CAA
[ENA]
¡û
>W1511524471
JYEG01000015
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
17922
17846
-
Leu
CAA
[ENA]
¡û
>W1511585529
LAYQ01000017
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
51344
51420
+
Leu
CAA
[ENA]
¡û
>W11176911
AFYA01000028
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
62470
62546
+
Leu
CAA
[ENA]
¡û
>C161003072
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
1578836
1578760
-
Leu
CAA
-
¡û
>C161003131
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
1570326
1570250
-
Leu
CAA
-
¡û
>C161040475
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
1591061
1590985
-
Leu
CAA
-
¡û
>C161063685
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
1495381
1495305
-
Leu
CAA
[Ensembl]
¡û
>C161081164
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
1481014
1480938
-
Leu
CAA
-
¡û
>C161096103
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
1548809
1548733
-
Leu
CAA
-
¡û
>W121016274
AGQQ01000024
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
208231
208155
-
Leu
CAA
[ENA]
¡û
>C131012057
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
1608292
1608216
-
Leu
CAA
[Ensembl]
¡û
>C131012117
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
1608291
1608215
-
Leu
CAA
[Ensembl]
¡û
>C131013506
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
1329893
1329817
-
Leu
CAA
[Ensembl]
¡û
>C131019782
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
1413640
1413564
-
Leu
CAA
[Ensembl]
¡û
>W1710039862
BAYH01000019
Actinomycetota
Corynebacterium glutamicum [BAYH]
32795
32719
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK