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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145364 (38 seq.)
>WENV180167264
OAVO01013360
[OAVO] human gut metagenome; faeces
571
648
+
Val
TAC
[ENA]
¡û
>WENV180208408
OBAI01168797
[OBAI] human gut metagenome; human gut
72
149
+
Val
TAC
[ENA]
¡û
>WENV180425875
OBVY01002380
[OBVY] human gut metagenome; faeces
1778
1855
+
Val
TAC
[ENA]
¡û
>WENV181669234
OGOL01015534
[OGOL] human gut metagenome; faeces
756
833
+
Val
TAC
[ENA]
¡û
>WENV181750710
OGQP01009204
[OGQP] human gut metagenome; faeces
3027
2950
-
Val
TAC
[ENA]
¡û
>WENV181753698
OGQR01001842
[OGQR] human gut metagenome; faeces
6393
6316
-
Val
TAC
[ENA]
¡û
>WENV181838231
OGVM01024009
[OGVM] freshwater metagenome; freshwater
500
425
-
Val
TAC
[ENA]
¡û
>WENV181944584
OGZA01005978
[OGZA] human gut metagenome; faeces
5426
5503
+
Val
TAC
[ENA]
¡û
>WENV182340889
OIAF01000203
[OIAF] human gut metagenome; feces
24044
24121
+
Val
TAC
[ENA]
¡û
>WENV182615077
OJKC01001156
[OJKC] metagenome; faeces
14530
14607
+
Val
TAC
[ENA]
¡û
>WENV182621362
OJKI01094017
[OJKI] metagenome; faeces
199
276
+
Val
TAC
[ENA]
¡û
>WENV182632017
OJKW01034966
[OJKW] metagenome; faeces
911
834
-
Val
TAC
[ENA]
¡û
>WENV182719325
OJPM01032928
[OJPM] human gut metagenome; stool sample
71
148
+
Val
TAC
[ENA]
¡û
>WENV182960253
OKWJ01003369
[OKWJ] human gut metagenome; human gut
712
789
+
Val
TAC
[ENA]
¡û
>WENV182972382
OKXI01032793
[OKXI] human gut metagenome; human gut
271
194
-
Val
TAC
[ENA]
¡û
>WENV183076746
OLIW01008634
[OLIW] human gut metagenome; feces
3113
3036
-
Val
TAC
[ENA]
¡û
>WENV183086937
OLJF01106541
[OLJF] metagenome; faeces
280
357
+
Val
TAC
[ENA]
¡û
>WENV183111335
OLNO01014525
[OLNO] human gut metagenome; faeces
1902
1979
+
Val
TAC
[ENA]
¡û
>WENV183354800
OLXC01009997
[OLXC] human gut metagenome; feces
1869
1792
-
Val
TAC
[ENA]
¡û
>WENV183569131
OOCB01016477
[OOCB] human gut metagenome; human gut
1502
1425
-
Val
TAC
[ENA]
¡û
>WENV170027082
CDTY01017722
[CDTY] gut metagenome; human stools
562
485
-
Val
TAC
[ENA]
¡û
>WENV170034106
CDYK01040550
[CDYK] gut metagenome; human stools
174
97
-
Val
TAC
[ENA]
¡û
>WENV170038692
CDYR01018129
[CDYR] gut metagenome; human stools
92
169
+
Val
TAC
[ENA]
¡û
>WENV170040573
CDYS01037251
[CDYS] gut metagenome; human stools
27966
28043
+
Val
TAC
[ENA]
¡û
>WENV170044612
CDYX01013057
[CDYX] gut metagenome; human stools
174
97
-
Val
TAC
[ENA]
¡û
>WENV170047408
CDYZ01031795
[CDYZ] gut metagenome; human stools
77
1
-
Val
TAC
[ENA]
¡û
>WENV170050541
CDZB01031296
[CDZB] gut metagenome; human stools
37178
37101
-
Val
TAC
[ENA]
¡û
>WENV170054425
CDZE01015961
[CDZE] gut metagenome; human stools
200
123
-
Val
TAC
[ENA]
¡û
>WENV170054739
CDZE01028307
[CDZE] gut metagenome; human stools
95
172
+
Val
TAC
[ENA]
¡û
>WENV170057308
CDZG01033352
[CDZG] gut metagenome; human stools
16449
16526
+
Val
TAC
[ENA]
¡û
>WENV170060982
CDZI01028146
[CDZI] gut metagenome; human stools
28420
28343
-
Val
TAC
[ENA]
¡û
>WENV170074423
CDZS01051747
[CDZS] gut metagenome; human stools
174
97
-
Val
TAC
[ENA]
¡û
>WENV170075082
CDZT01021161
[CDZT] gut metagenome; human stools
33529
33606
+
Val
TAC
[ENA]
¡û
>WENV170077130
CDZU01022935
[CDZU] gut metagenome; human stools
147069
146992
-
Val
TAC
[ENA]
¡û
>WENV170085301
CEAB01045888
[CEAB] gut metagenome; human stools
34382
34459
+
Val
TAC
[ENA]
¡û
>WENV170094164
CEAH01059174
[CEAH] gut metagenome; human stools
23170
23247
+
Val
TAC
[ENA]
¡û
>WENV170637889
JFBN01368087
[JFBN] chicken gut metagenome; ceca of Broiler chicken
567
490
-
Val
TAC
[ENA]
¡û
>C191008000
AP019739
Bacteroidota
Alistipes communis 6CPBBH3 [AP019739]
2250285
2250362
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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