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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145409 (40 seq.)
>W1711621234
MPCX01000001
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
401075
401000
-
His
GTG
[ENA]
¡û
>W131211419
ATMR01000091
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
98185
98110
-
His
GTG
[ENA]
¡û
>C171092572
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
2073310
2073235
-
His
GTG
-
¡û
>WENV182557634
OJDK01000933
[OJDK] seawater metagenome; Sea water
6118
6043
-
His
GTG
[ENA]
¢þ
>WENV182561011
OJDV01001744
[OJDV] seawater metagenome; Sea water
5968
5893
-
His
GTG
[ENA]
¢þ
>WENV182580241
OJGU01021942
[OJGU] seawater metagenome; Sea water
313
238
-
His
GTG
[ENA]
¢þ
>WENV182587411
OJHM01003935
[OJHM] seawater metagenome; Sea water
869
794
-
His
GTG
[ENA]
¢þ
>WENV182588086
OJHO01002890
[OJHO] seawater metagenome; Sea water
2023
1948
-
His
GTG
[ENA]
¢þ
>W141276320
JADR01000006
Bacteroidota
Olleya marilimosa CAM030 [JADR]
29385
29460
+
His
GTG
[ENA]
¡û
>W141276337
JADS01000002
Bacteroidota
Olleya sp. VCSA23 [JADS]
145051
144976
-
His
GTG
[ENA]
¡û
>W141276372
JADT01000001
Bacteroidota
Olleya sp. VCSM12 [JADT]
503199
503124
-
His
GTG
[ENA]
¡û
>WENV183057081
OLHK01002341
[OLHK] seawater metagenome; Sea water
2122
2047
-
His
GTG
[ENA]
¢þ
>WENV183064930
OLII01004377
[OLII] seawater metagenome; Sea water
3246
3171
-
His
GTG
[ENA]
¢þ
>WENV170298140
CESF01053946
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
29355
29430
+
His
GTG
[ENA]
¢þ
>WENV170923088
MDTG01042933
[MDTG] marine metagenome; seawater
283599
283524
-
His
GTG
[ENA]
¢þ
>C181113333
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
3605615
3605540
-
His
GTG
-
¡û
>C181202834
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
1061101
1061026
-
His
GTG
-
¡û
>C191083469
CP031964
Bacteroidota
Flavobacteriaceae bacterium AU392 [CP031964]
1685612
1685687
+
His
GTG
-
¡û
>C191166167
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
2938714
2938789
+
His
GTG
-
¡û
>W141563326
JHZX01000001
Bacteroidota
Sediminibacter sp. Hel_I_10 [JHZX]
3945111
3945186
+
His
GTG
[ENA]
¡û
>W1910693664
MDGO01000013
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
29245
29320
+
His
GTG
[ENA]
¡û
>W1810157340
PJBW01000006
Bacteroidota
Olleya sp. 1-3 [PJBW]
7063
6988
-
His
GTG
[ENA]
¡û
>W1810586320
QFFG01000006
Bacteroidota
Polaribacter aquimarinus ZY113 [QFFG]
28489
28564
+
His
GTG
[ENA]
¡û
>W1810672062
QJTD01000006
Bacteroidota
Winogradskyella epiphytica CECT 7945 [QJTD]
62699
62774
+
His
GTG
[ENA]
¡û
>W1810693694
QLLO01000002
Bacteroidota
Olleya aquimaris DSM 24464 [QLLO]
189184
189259
+
His
GTG
[ENA]
¡û
>W1810759627
QPJO01000003
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
90281
90206
-
His
GTG
[ENA]
¡û
>W1810787637
QRDV01000007
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
41377
41302
-
His
GTG
[ENA]
¡û
>W1810788333
QREI01000003
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
432354
432429
+
His
GTG
[ENA]
¡û
>W1810885410
QUNH01000002
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
363181
363256
+
His
GTG
[ENA]
¡û
>C151002357
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
2959313
2959237
-
His
GTG
[Ensembl]
¡û
>C11111986
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
2448219
2448294
+
His
GTG
[Ensembl]
¡û
>W1511388623
JSWG01000010
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
11757
11832
+
His
GTG
[ENA]
¡û
>W1511432846
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
663749
663674
-
His
GTG
[ENA]
¡û
>W1511505218
JXJO01000019
Bacteroidota
Psychroserpens damuponensis JCM 17632 [JXJO]
91867
91942
+
His
GTG
[ENA]
¡û
>W1511505236
JXJP01000006
Bacteroidota
Psychroserpens mesophilus JCM 13413 [JXJP]
13321
13396
+
His
GTG
[ENA]
¡û
>W11152622
AEYR01000003
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
506564
506489
-
His
GTG
[ENA]
¡û
>W1610060564
BCBW01000019
Bacteroidota
Olleya sp. ITB9 [BCBW]
26164
26089
-
His
GTG
[ENA]
¡û
>W1710057819
BCBW01000019
Bacteroidota
Olleya sp. ITB9 [BCBW]
26164
26089
-
His
GTG
[ENA]
¡û
>W1710516982
FNCZ01000002
Bacteroidota
Winogradskyella thalassocola [FNCZ]
279945
280020
+
His
GTG
[ENA]
¡û
>W1710565817
FORM01000005
Bacteroidota
Olleya namhaensis [FORM]
7106
7031
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK