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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145487 (55 seq.)
>W1710777839
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
368972
369048
+
Arg
TCT
[ENA]
¡û
>W1710777892
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
345897
345973
+
Arg
TCT
[ENA]
¡û
>W1710892069
LNDJ01000107
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
41594
41670
+
Arg
TCT
[ENA]
¡û
>W1711227883
LXWA01000053
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
47204
47280
+
Arg
TCT
[ENA]
¡û
>W1711303099
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
359656
359732
+
Arg
TCT
[ENA]
¡û
>W1711682984
MRYC01000001
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
44286
44210
-
Arg
TCT
[ENA]
¡û
>C171019143
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1700627
1700551
-
Arg
TCT
-
¡û
>C015797
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
270136
270212
+
Arg
TCT
[Ensembl]
¡û
>WENV180101034
OAOU01000013
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
24841
24765
-
Arg
TCT
[ENA]
¢þ
>w003203
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
394936
394863
-
Arg
TCT
[ENA]
¡û
>WENV180366844
OBOD01169060
[OBOD] marine metagenome; ENVO:00002010
182
258
+
Arg
TCT
[ENA]
¢þ
>W141086187
AUSW01000032
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
40161
40237
+
Arg
TCT
[ENA]
¡û
>W141195651
AYUI01000011
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
66024
66100
+
Arg
TCT
[ENA]
¡û
>W141199945
AYXM01000038
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
17661
17737
+
Arg
TCT
[ENA]
¡û
>W141199990
AYXN01000017
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
66024
66100
+
Arg
TCT
[ENA]
¡û
>W141200515
AYXZ01000085
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
73028
72952
-
Arg
TCT
[ENA]
¡û
>W141200567
AYYA01000044
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
166812
166736
-
Arg
TCT
[ENA]
¡û
>C08007194
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
270136
270212
+
Arg
TCT
[Ensembl]
¡û
>W141233962
BAWG01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
398347
398423
+
Arg
TCT
[ENA]
¡û
>W141234003
BAWH01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
113503
113579
+
Arg
TCT
[ENA]
¡û
>W141234035
BAWI01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
375852
375928
+
Arg
TCT
[ENA]
¡û
>W141234089
BAWJ01000005
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
32025
31949
-
Arg
TCT
[ENA]
¡û
>WENV182542152
OJAV01005937
[OJAV] seawater metagenome; Sea water
513
589
+
Arg
TCT
[ENA]
¢þ
>WENV182549758
OJBZ01000001
[OJBZ] seawater metagenome; Sea water
200029
199953
-
Arg
TCT
[ENA]
¢þ
>WENV182562347
OJDZ01001194
[OJDZ] seawater metagenome; Sea water
4306
4230
-
Arg
TCT
[ENA]
¢þ
>WENV170014629
AYSL01001568
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
3037
3113
+
Arg
TCT
[ENA]
¢þ
>WENV170121543
CENM01039698
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2951
2875
-
Arg
TCT
[ENA]
¢þ
>WENV170579049
FUFK010037828
[FUFK] metagenome; unknown
24992
24916
-
Arg
TCT
[ENA]
¢þ
>WENV170581719
FUFK010066801
[FUFK] metagenome; unknown
2124
2200
+
Arg
TCT
[ENA]
¢þ
>WENV170583934
FUFK010176131
[FUFK] metagenome; unknown
1950
1874
-
Arg
TCT
[ENA]
¢þ
>WENV170590985
FUFK010746817
[FUFK] metagenome; unknown
4619
4543
-
Arg
TCT
[ENA]
¢þ
>WENV170793924
MDSV01124168
[MDSV] marine metagenome; seawater
1938
1862
-
Arg
TCT
[ENA]
¢þ
>W1810155457
PJAS01000052
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
87411
87335
-
Arg
TCT
[ENA]
¡û
>W1810155504
PJAT01000092
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
356
280
-
Arg
TCT
[ENA]
¡û
>W1810156168
PJBD01000007
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
56719
56795
+
Arg
TCT
[ENA]
¡û
>W1810156336
PJBF01000058
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
127751
127827
+
Arg
TCT
[ENA]
¡û
>W1810156432
PJBH01000062
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
23873
23949
+
Arg
TCT
[ENA]
¡û
>W1810157273
PJBU01000114
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
76267
76343
+
Arg
TCT
[ENA]
¡û
>W1810157378
PJBX01000159
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
65428
65504
+
Arg
TCT
[ENA]
¡û
>W1810157413
PJBY01000067
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
34981
35057
+
Arg
TCT
[ENA]
¡û
>W1810596404
QGGM01000007
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
118109
118185
+
Arg
TCT
[ENA]
¡û
>W1810671418
QJSU01000001
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
254840
254764
-
Arg
TCT
[ENA]
¡û
>W1810692676
QLKS01000003
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
229666
229590
-
Arg
TCT
[ENA]
¡û
>C161042726
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
356385
356461
+
Arg
TCT
-
¡û
>C161042774
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
345020
345096
+
Arg
TCT
[Ensembl]
¡û
>W121043484
AHVZ01000003
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
62332
62256
-
Arg
TCT
[ENA]
¡û
>W1610112399
CZJV02000092
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
82384
82460
+
Arg
TCT
[ENA]
¡û
>W1610632724
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
135272
135196
-
Arg
TCT
[ENA]
¡û
>W1610642025
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
368972
369048
+
Arg
TCT
[ENA]
¡û
>W1610642078
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
345897
345973
+
Arg
TCT
[ENA]
¡û
>W1610752335
LNDJ01000107
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
41594
41670
+
Arg
TCT
[ENA]
¡û
>W1611011847
LXWA01000053
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
47204
47280
+
Arg
TCT
[ENA]
¡û
>W1710115103
CZJV02000092
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
82384
82460
+
Arg
TCT
[ENA]
¡û
>W1710513789
FNAL01000001
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
107845
107921
+
Arg
TCT
[ENA]
¡û
>W1710767156
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
135272
135196
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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