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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145490 (85 seq.)
>W1710777849
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1962163
1962239
+
Met
CAT
[ENA]
¡û
>W1710777901
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
2024272
2024348
+
Met
CAT
[ENA]
¡û
>W1710892056
LNDJ01000047
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
49640
49564
-
Met
CAT
[ENA]
¡û
>W1710915853
LNUO01000065
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
134
58
-
Met
CAT
[ENA]
¡û
>W1711227886
LXWA01000066
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
483
559
+
Met
CAT
[ENA]
¡û
>W1711303117
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
73138
73214
+
Met
CAT
[ENA]
¡û
>W1711682902
MRYA01000002
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
220103
220027
-
Met
CAT
[ENA]
¡û
>W1711682942
MRYB01000002
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
328783
328859
+
Met
CAT
[ENA]
¡û
>W1711682986
MRYC01000002
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
192827
192751
-
Met
CAT
[ENA]
¡û
>W1711766688
MUYT01000004
Gammaproteobacteria
Moraxella lincolnii [MUYT]
238089
238165
+
Met
CAT
[ENA]
¡û
>C015809
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1653280
1653356
+
Met
CAT
[Ensembl]
¡û
>C015994
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
1186793
1186717
-
Met
CAT
[Ensembl]
¡û
>C017890
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
1566834
1566910
+
Met
CAT
[Ensembl]
¡û
>C171019107
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
723978
724054
+
Met
CAT
-
¡û
>C171131089
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
1363771
1363695
-
Met
CAT
-
¡û
>WENV180101041
OAOU01000023
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
40796
40872
+
Ile2
CAT
[ENA]
¢þ
>WENV180101070
OAOU01000142
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
14458
14534
+
Ile2
CAT
[ENA]
¢þ
>WENV180101092
OAOU01000430
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
6368
6444
+
Ile2
CAT
[ENA]
¢þ
>w003215
AADI01000002
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
74747
74674
-
Met
CAT
[ENA]
¡û
>W141086196
AUSW01000035
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
98418
98342
-
Met
CAT
[ENA]
¡û
>W141195664
AYUI01000036
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
2249
2173
-
Met
CAT
[ENA]
¡û
>W141199927
AYXM01000010
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
55904
55980
+
Met
CAT
[ENA]
¡û
>W141200000
AYXN01000026
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
9902
9826
-
Met
CAT
[ENA]
¡û
>W141200528
AYXZ01000122
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
40918
40994
+
Met
CAT
[ENA]
¡û
>W141200553
AYYA01000006
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
79936
80012
+
Met
CAT
[ENA]
¡û
>C08007206
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1653280
1653356
+
Met
CAT
[Ensembl]
¡û
>W141234022
BAWH01000017
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
52051
51975
-
Met
CAT
[ENA]
¡û
>W141234058
BAWI01000007
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
37427
37351
-
Met
CAT
[ENA]
¡û
>W141234101
BAWJ01000012
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
49053
49129
+
Met
CAT
[ENA]
¡û
>WENV182542120
OJAV01003634
[OJAV] seawater metagenome; Sea water
906
830
-
Ile2
CAT
[ENA]
¢þ
>WENV182550190
OJBZ01009084
[OJBZ] seawater metagenome; Sea water
31
107
+
Ile2
CAT
[ENA]
¢þ
>WENV182562482
OJDZ01003987
[OJDZ] seawater metagenome; Sea water
1535
1459
-
Ile2
CAT
[ENA]
¢þ
>WENV170014700
AYSL01005798
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
926
1002
+
Met
CAT
[ENA]
¢þ
>WENV170121528
CENM01039272
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6622
6698
+
Met
CAT
[ENA]
¢þ
>WENV170136598
CENV01052387
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
874
950
+
Met
CAT
[ENA]
¢þ
>WENV170488263
CEVO01148765
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
467
541
+
Met
CAT
[ENA]
¢þ
>WENV170563347
CZCB01015608
[CZCB] anaerobic digester metagenome; anaerobic digester
5039
4963
-
Met
CAT
[ENA]
¢þ
>WENV170579940
FUFK010042567
[FUFK] metagenome; unknown
2185
2261
+
Met
CAT
[ENA]
¢þ
>WENV170580007
FUFK010043303
[FUFK] metagenome; unknown
873
797
-
Met
CAT
[ENA]
¢þ
>WENV170580643
FUFK010048920
[FUFK] metagenome; unknown
717
641
-
Met
CAT
[ENA]
¢þ
>WENV170584296
FUFK010204596
[FUFK] metagenome; unknown
759
835
+
Met
CAT
[ENA]
¢þ
>WENV170585451
FUFK010292865
[FUFK] metagenome; unknown
409
485
+
Met
CAT
[ENA]
¢þ
>WENV170593115
FUFK010844664
[FUFK] metagenome; unknown
972
896
-
Met
CAT
[ENA]
¢þ
>WENV170593229
FUFK010853267
[FUFK] metagenome; unknown
2185
2261
+
Met
CAT
[ENA]
¢þ
>WENV170794964
MDSV01140296
[MDSV] marine metagenome; seawater
2584
2660
+
Met
CAT
[ENA]
¢þ
>WENV170825687
MDSY01097927
[MDSY] marine metagenome; seawater
89
13
-
Met
CAT
[ENA]
¢þ
>WENV170931654
MDTG01188804
[MDTG] marine metagenome; seawater
2378
2454
+
Met
CAT
[ENA]
¢þ
>C181056050
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2951641
2951565
-
Met
CAT
-
¡û
>C181185202
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
1493939
1494015
+
Met
CAT
-
¡û
>C191163867
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
1322233
1322157
-
Met
CAT
-
¡û
>W09103302
AAJC01000002
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
151214
151290
+
Met
CAT
[ENA]
¡û
>W09105553
AAPX01000001
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
444208
444284
+
Met
CAT
[ENA]
¡û
>W1910377590
FUKN01000010
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
98607
98531
-
Met
CAT
[ENA]
¡û
>W1910891641
NEXR01000003
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
508696
508620
-
Met
CAT
[ENA]
¡û
>W1910891791
NEXU01000112
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
590
514
-
Met
CAT
[ENA]
¡û
>W1911203676
NRGY01000003
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
96880
96804
-
Met
CAT
[ENA]
¡û
>W1911397595
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
102714
102638
-
Met
CAT
[ENA]
¡û
>W1911534874
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
2427958
2427882
-
Met
CAT
[ENA]
¡û
>W1810155469
PJAS01000061
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
66091
66015
-
Met
CAT
[ENA]
¡û
>W1810155515
PJAT01000106
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
20258
20334
+
Met
CAT
[ENA]
¡û
>W1810156166
PJBD01000006
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
36059
36135
+
Met
CAT
[ENA]
¡û
>W1810156316
PJBF01000040
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
8360
8436
+
Met
CAT
[ENA]
¡û
>W1810156424
PJBH01000056
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
115874
115950
+
Met
CAT
[ENA]
¡û
>W1810157266
PJBU01000112
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
73467
73391
-
Met
CAT
[ENA]
¡û
>W1810157370
PJBX01000131
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
34628
34552
-
Met
CAT
[ENA]
¡û
>W1810157441
PJBY01000110
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
181621
181697
+
Met
CAT
[ENA]
¡û
>W1810596420
QGGM01000024
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
25195
25119
-
Met
CAT
[ENA]
¡û
>W1810671443
QJSU01000008
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
5000
4924
-
Met
CAT
[ENA]
¡û
>W1810692650
QLKS01000001
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
386358
386434
+
Met
CAT
[ENA]
¡û
>C151097235
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
2756614
2756538
-
Met
CAT
-
¡û
>C161042758
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
1325164
1325088
-
Met
CAT
-
¡û
>C161042806
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
1349038
1348962
-
Met
CAT
[Ensembl]
¡û
>C161079263
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
1919273
1919349
+
Met
CAT
[Ensembl]
¡û
>W121043509
AHVZ01000020
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
106204
106128
-
Met
CAT
[ENA]
¡û
>W1610112392
CZJV02000077
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
30260
30336
+
Met
CAT
[ENA]
¡û
>C131017404
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
1153731
1153655
-
Met
CAT
[Ensembl]
¡û
>W1610632741
LIQB01000005
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
176816
176892
+
Met
CAT
[ENA]
¡û
>W1610642035
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1962163
1962239
+
Met
CAT
[ENA]
¡û
>W1610642087
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
2024272
2024348
+
Met
CAT
[ENA]
¡û
>W1610752322
LNDJ01000047
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
49640
49564
-
Met
CAT
[ENA]
¡û
>W1610774092
LNUO01000065
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
134
58
-
Met
CAT
[ENA]
¡û
>W1611011850
LXWA01000066
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
483
559
+
Met
CAT
[ENA]
¡û
>W1710115096
CZJV02000077
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
30260
30336
+
Met
CAT
[ENA]
¡û
>W1710513813
FNAL01000009
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
4864
4788
-
Met
CAT
[ENA]
¡û
>W1710767173
LIQB01000005
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
176816
176892
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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