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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145493 (83 seq.)
>W1710777841
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
519559
519635
+
Met
CAT
[ENA]
¡û
>W1710777894
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
500480
500556
+
Met
CAT
[ENA]
¡û
>W1711224208
LXTW01000006
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
243
167
-
Met
CAT
[ENA]
¡û
>W1711268978
LZDM01000005
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
247
171
-
Met
CAT
[ENA]
¡û
>W1711269049
LZDN01000040
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
119431
119507
+
Met
CAT
[ENA]
¡û
>W1711269140
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
239877
239953
+
Met
CAT
[ENA]
¡û
>W1711269198
LZDR01000049
Gammaproteobacteria
Moraxella lacunata [LZDR]
232
156
-
Met
CAT
[ENA]
¡û
>W1711282057
LZMS01000041
Gammaproteobacteria
Moraxella lacunata [LZMS]
55777
55853
+
Met
CAT
[ENA]
¡û
>W1711303101
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
512416
512492
+
Met
CAT
[ENA]
¡û
>W1711765720
MUXU01000015
Gammaproteobacteria
Moraxella caviae [MUXU]
225
149
-
Met
CAT
[ENA]
¡û
>W1711765802
MUXV01000063
Gammaproteobacteria
Moraxella bovis [MUXV]
191
115
-
Met
CAT
[ENA]
¡û
>W1711799845
MXAN01000047
Gammaproteobacteria
Moraxella lacunata [MXAN]
17644
17720
+
Met
CAT
[ENA]
¡û
>W1711799957
MXAP01000199
Gammaproteobacteria
Moraxella equi [MXAP]
204
128
-
Met
CAT
[ENA]
¡û
>W131180586
ARNF01000077
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
89352
89276
-
Met
CAT
[ENA]
¡û
>W131061288
ANIN01000002
Gammaproteobacteria
Moraxella macacae 408225 [ANIN]
339373
339297
-
Met
CAT
[ENA]
¡û
>W131228795
AUGF01000077
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
471
395
-
Met
CAT
[ENA]
¡û
>C015799
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
408595
408671
+
Met
CAT
[Ensembl]
¡û
>C015962
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
441620
441696
+
Met
CAT
[Ensembl]
¡û
>C171131057
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
495706
495782
+
Met
CAT
-
¡û
>WENV180101025
OAOU01000003
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
124350
124426
+
Met
CAT
[ENA]
¢þ
>WENV180101052
OAOU01000071
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
8845
8769
-
Met
CAT
[ENA]
¢þ
>w003205
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
256478
256400
-
Met
CAT
[ENA]
¡û
>WENV180711630
ODFQ01000010
[ODFQ] human metagenome; G_DNA_Anterior nares
47235
47311
+
Met
CAT
[ENA]
¢þ
>WENV180793946
ODIX01002309
[ODIX] human metagenome; G_DNA_Anterior nares
79
3
-
Met
CAT
[ENA]
¢þ
>WENV180838877
ODKH01000015
[ODKH] human metagenome; G_DNA_Anterior nares
352
276
-
Met
CAT
[ENA]
¢þ
>WENV180878944
ODLY01009091
[ODLY] human metagenome; G_DNA_Anterior nares
217
293
+
Met
CAT
[ENA]
¢þ
>W141086179
AUSW01000030
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
73351
73275
-
Met
CAT
[ENA]
¡û
>WENV180984645
ODVI01000005
[ODVI] human metagenome; G_DNA_Anterior nares
122274
122350
+
Met
CAT
[ENA]
¢þ
>WENV181131540
OEGC01002425
[OEGC] human metagenome; G_DNA_Anterior nares
316
240
-
Met
CAT
[ENA]
¢þ
>W141199928
AYXM01000014
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
13555
13479
-
Met
CAT
[ENA]
¡û
>W141200508
AYXZ01000066
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
71634
71710
+
Met
CAT
[ENA]
¡û
>W141200569
AYYA01000044
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
14003
13927
-
Met
CAT
[ENA]
¡û
>C08007196
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
408595
408671
+
Met
CAT
[Ensembl]
¡û
>W141233964
BAWG01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
549963
550039
+
Met
CAT
[ENA]
¡û
>W141234013
BAWH01000009
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
116578
116654
+
Met
CAT
[ENA]
¡û
>W141234037
BAWI01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
532693
532769
+
Met
CAT
[ENA]
¡û
>W141234095
BAWJ01000009
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
58998
59074
+
Met
CAT
[ENA]
¡û
>WENV182542129
OJAV01004017
[OJAV] seawater metagenome; Sea water
61
137
+
Met
CAT
[ENA]
¢þ
>WENV182549760
OJBZ01000001
[OJBZ] seawater metagenome; Sea water
50023
49947
-
Met
CAT
[ENA]
¢þ
>WENV182562294
OJDZ01000557
[OJDZ] seawater metagenome; Sea water
7518
7442
-
Met
CAT
[ENA]
¢þ
>WENV183748154
PPFU01015731
[PPFU] hypolithon metagenome; Antarctic Hypolithon
4358
4282
-
Met
CAT
[ENA]
¢þ
>WENV183748470
PPFU01042174
[PPFU] hypolithon metagenome; Antarctic Hypolithon
211
287
+
Met
CAT
[ENA]
¢þ
>WENV170563280
CZCB01013523
[CZCB] anaerobic digester metagenome; anaerobic digester
346
270
-
Met
CAT
[ENA]
¢þ
>C181056041
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2206468
2206544
+
Met
CAT
-
¡û
>C181190865
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
444295
444371
+
Met
CAT
-
¡û
>C191163860
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2741215
2741139
-
Met
CAT
-
¡û
>W09103308
AAJC01000004
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
166231
166307
+
Met
CAT
[ENA]
¡û
>W1910377613
FUKN01000014
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
584299
584375
+
Met
CAT
[ENA]
¡û
>W1910891777
NEXU01000066
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
1462
1386
-
Met
CAT
[ENA]
¡û
>W1910977018
NKHK01000014
Gammaproteobacteria
Moraxella sp. VT-16-12 [NKHK]
4744
4668
-
Met
CAT
[ENA]
¡û
>W1911203654
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1191162
1191086
-
Met
CAT
[ENA]
¡û
>W1810155470
PJAS01000062
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
12268
12344
+
Met
CAT
[ENA]
¡û
>W1810155520
PJAT01000123
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
61737
61813
+
Met
CAT
[ENA]
¡û
>W1810156200
PJBD01000108
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
1003
927
-
Met
CAT
[ENA]
¡û
>W1810156338
PJBF01000058
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
279271
279347
+
Met
CAT
[ENA]
¡û
>W1810156413
PJBH01000002
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
30646
30570
-
Met
CAT
[ENA]
¡û
>W1810157267
PJBU01000113
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
61154
61230
+
Met
CAT
[ENA]
¡û
>W1810157434
PJBY01000101
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
80305
80381
+
Met
CAT
[ENA]
¡û
>W1810596396
QGGM01000006
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
55593
55669
+
Met
CAT
[ENA]
¡û
>W1810671420
QJSU01000001
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
86115
86039
-
Met
CAT
[ENA]
¡û
>W1810692678
QLKS01000003
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
76362
76286
-
Met
CAT
[ENA]
¡û
>C151097228
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1929666
1929742
+
Met
CAT
-
¡û
>C161042728
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
504574
504650
+
Met
CAT
-
¡û
>C161042776
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
493667
493743
+
Met
CAT
[Ensembl]
¡û
>C161079256
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
500296
500372
+
Met
CAT
[Ensembl]
¡û
>W121043529
AHVZ01000041
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
61249
61173
-
Met
CAT
[ENA]
¡û
>W1610071727
BCUH01000003
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
47080
47156
+
Met
CAT
[ENA]
¡û
>W1610071907
BCUK01000367
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
191
115
-
Met
CAT
[ENA]
¡û
>W1610112386
CZJV02000072
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
94304
94380
+
Met
CAT
[ENA]
¡û
>C131017372
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
441787
441863
+
Met
CAT
[Ensembl]
¡û
>W1610632753
LIQB01000011
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
92862
92786
-
Met
CAT
[ENA]
¡û
>W1610642027
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
519559
519635
+
Met
CAT
[ENA]
¡û
>W1610642080
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
500480
500556
+
Met
CAT
[ENA]
¡û
>W1611008579
LXTW01000006
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
243
167
-
Met
CAT
[ENA]
¡û
>W1611029790
LZDM01000005
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
247
171
-
Met
CAT
[ENA]
¡û
>W1611029861
LZDN01000040
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
119431
119507
+
Met
CAT
[ENA]
¡û
>W1611029952
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
239877
239953
+
Met
CAT
[ENA]
¡û
>W1611030010
LZDR01000049
Gammaproteobacteria
Moraxella lacunata [LZDR]
232
156
-
Met
CAT
[ENA]
¡û
>W1611041268
LZMS01000041
Gammaproteobacteria
Moraxella lacunata [LZMS]
55777
55853
+
Met
CAT
[ENA]
¡û
>W1710068929
BCUH01000003
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
47080
47156
+
Met
CAT
[ENA]
¡û
>W1710069109
BCUK01000367
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
191
115
-
Met
CAT
[ENA]
¡û
>W1710115090
CZJV02000072
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
94304
94380
+
Met
CAT
[ENA]
¡û
>W1710767185
LIQB01000011
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
92862
92786
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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