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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145503 (38 seq.)
>W1711071993
LSHB01000024
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
133810
133734
-
Asn
GTT
[ENA]
¡û
>W1712082003
NHOS01000001
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
1129231
1129155
-
Asn
GTT
[ENA]
¡û
>C171048126
CP016373
Bacteroidota
Elizabethkingia anophelis 3375 [CP016373]
1591770
1591696
-
Asn
GTT
-
¡û
>W131227752
AUFK01000013
Bacteroidota
Epilithonimonas caeni DSM 17710 [AUFK]
161397
161473
+
Asn
GTT
[ENA]
¡û
>WENV180358010
OBNO01049314
[OBNO] marine metagenome; ENVO 00002150
301
227
-
Asn
GTT
[ENA]
¢þ
>WENV183714123
PDWI01169068
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1391
1465
+
Asn
GTT
[ENA]
¢þ
>WENV170012354
APMI01159742
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
14
88
+
Asn
GTT
[ENA]
¢þ
>C181225795
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
1650877
1650951
+
Asn
GTT
-
¡û
>C191115513
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
1590053
1589977
-
Asn
GTT
-
¡û
>C191115585
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
5065849
5065773
-
Asn
GTT
-
¡û
>C191116450
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
880318
880392
+
Asn
GTT
-
¡û
>C191120416
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
1161217
1161291
+
Asn
GTT
-
¡û
>C191120908
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
2584563
2584489
-
Asn
GTT
-
¡û
>C191120924
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
207755
207829
+
Asn
GTT
-
¡û
>C191218916
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
2993651
2993725
+
Asn
GTT
-
¡û
>W141806147
JPLY01000001
Bacteroidota
Epilithonimonas lactis [JPLY]
703121
703197
+
Asn
GTT
[ENA]
¡û
>W141806196
JPLZ01000002
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
241923
241999
+
Asn
GTT
[ENA]
¡û
>W1910933649
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
702575
702501
-
Asn
GTT
[ENA]
¡û
>W1911701322
QNUG01000014
Bacteroidota
Epilithonimonas hispanica KCTC 22104 [QNUG]
99511
99585
+
Asn
GTT
[ENA]
¡û
>W1911701340
QNUG01000058
Bacteroidota
Epilithonimonas hispanica KCTC 22104 [QNUG]
4915
4989
+
Asn
GTT
[ENA]
¡û
>W1911708512
QOVY01000002
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
12573
12647
+
Asn
GTT
[ENA]
¡û
>W1810282704
PSZL01000006
Bacteroidota
Apibacter sp. wkB309 [PSZL]
68472
68398
-
Asn
GTT
[ENA]
¡û
>W1610095097
CYUH01000014
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
6167
6093
-
Asn
GTT
[ENA]
¡û
>W1610207151
FCOR01000004
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
122946
123022
+
Asn
GTT
[ENA]
¡û
>W1610637938
LIVM01000004
Bacteroidota
Apibacter mensalis [LIVM]
122946
123022
+
Asn
GTT
[ENA]
¡û
>W1610911253
LSHB01000024
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
133810
133734
-
Asn
GTT
[ENA]
¡û
>W1710097892
CYUH01000014
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
6167
6093
-
Asn
GTT
[ENA]
¡û
>W1710207845
FCOR01000004
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
122946
123022
+
Asn
GTT
[ENA]
¡û
>W1710512284
FMZH01000005
Bacteroidota
Pedobacter soli [FMZH]
32901
32977
+
Asn
GTT
[ENA]
¡û
>W1710512289
FMZH01000005
Bacteroidota
Pedobacter soli [FMZH]
2825
2751
-
Asn
GTT
[ENA]
¡û
>W1710514137
FNAS01000001
Bacteroidota
Riemerella columbipharyngis [FNAS]
71736
71812
+
Asn
GTT
[ENA]
¡û
>W1710514877
FNBH01000001
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
6814
6740
-
Asn
GTT
[ENA]
¡û
>W1710550496
FOFI01000002
Bacteroidota
Epilithonimonas lactis [FOFI]
555994
556070
+
Asn
GTT
[ENA]
¡û
>W1710587263
FQYI01000004
Bacteroidota
Cruoricaptor ignavus [FQYI]
80394
80318
-
Asn
GTT
[ENA]
¡û
>W1710589854
FRAM01000001
Bacteroidota
Epilithonimonas mollis molle [FRAM]
1629079
1629153
+
Asn
GTT
[ENA]
¡û
>W1710594737
FSRK01000002
Bacteroidota
Epilithonimonas zeae [FSRK]
359138
359062
-
Asn
GTT
[ENA]
¡û
>W1710595898
FTMF01000009
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
169963
170039
+
Asn
GTT
[ENA]
¡û
>W1710772711
LIVM01000004
Bacteroidota
Apibacter mensalis [LIVM]
122946
123022
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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