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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145517 (52 seq.)
>W1710875568
LMOM01000054
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
162757
162833
+
Ile
GAT
[ENA]
¡û
>W131176770
ARKH01000094
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
76462
76386
-
Ile
GAT
[ENA]
¡û
>W131104563
APCS01000001
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
119989
119913
-
Ile
GAT
[ENA]
¡û
>W131213886
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1799743
1799819
+
Ile
GAT
[ENA]
¡û
>W131237094
AUMV01000007
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
57875
57799
-
Ile
GAT
[ENA]
¡û
>W1711708225
MSTI01000005
Deinococcota
Deinococcus marmoris [MSTI]
24322
24398
+
Ile
GAT
[ENA]
¡û
>W1711743916
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
2290938
2291014
+
Ile
GAT
[ENA]
¡û
>W1712080679
NHMK01000030
Deinococcota
Deinococcus indicus [NHMK]
195150
195074
-
Ile
GAT
[ENA]
¡û
>C007940
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
886348
886424
+
Ile
GAT
[Ensembl]
¡û
>WENV180232176
OBCO01000166
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
36948
37024
+
Ile
GAT
[ENA]
¢þ
>WENV180233211
OBCP01000212
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
36948
37024
+
Ile
GAT
[ENA]
¢þ
>WENV180569664
OCLR01000289
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
15759
15835
+
Ile
GAT
[ENA]
¢þ
>WENV180570616
OCLS01000310
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
45885
45809
-
Ile
GAT
[ENA]
¢þ
>WENV180571546
OCLT01000163
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
36948
37024
+
Ile
GAT
[ENA]
¢þ
>WENV180573769
OCLW01000157
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
36948
37024
+
Ile
GAT
[ENA]
¢þ
>WENV180639839
OCRL01000158
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
36948
37024
+
Ile
GAT
[ENA]
¢þ
>WENV180640768
OCRM01000161
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
36948
37024
+
Ile
GAT
[ENA]
¢þ
>WENV181223675
OFDC01065923
[OFDC] hot springs metagenome; Water
26
102
+
Ile
GAT
[ENA]
¢þ
>W141154796
AXLL01000197
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
2677
2601
-
Ile
GAT
[ENA]
¡û
>C181179562
CP029494
Deinococcota
Deinococcus irradiatisoli 17bor-2 [CP029494]
2964757
2964681
-
Ile
GAT
-
¡û
>C181185080
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
956581
956657
+
Ile
GAT
-
¡û
>C181196482
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1408508
1408432
-
Ile
GAT
-
¡û
>C191018460
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2205720
2205644
-
Ile
GAT
-
¡û
>W141525700
JHAC01000062
Deinococcota
Deinococcus phoenicis [JHAC]
9428
9504
+
Ile
GAT
[ENA]
¡û
>C191121205
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
1963541
1963617
+
Ile
GAT
-
¡û
>W141561455
JHYL01000002
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
323349
323273
-
Ile
GAT
[ENA]
¡û
>W141702068
JMLF01000010
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
86729
86653
-
Ile
GAT
[ENA]
¡û
>W141731135
JNIV01000037
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
26932
27008
+
Ile
GAT
[ENA]
¡û
>W141731156
JNIW01000001
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
149792
149868
+
Ile
GAT
[ENA]
¡û
>W141816927
JQKG01000030
Deinococcota
Deinococcus misasensis DSM 22328 [JQKG]
8137
8213
+
Ile
GAT
[ENA]
¡û
>C09103906
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
2149694
2149618
-
Ile
GAT
[Ensembl]
¡û
>W1911788283
QYCQ01000164
Deinococcota
Deinococcus sp. RM [QYCQ]
30767
30843
+
Ile
GAT
[ENA]
¡û
>W1911802507
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
2982787
2982711
-
Ile
GAT
[ENA]
¡û
>SRA1003222
SRR002326.315169
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
95
19
-
Ile
GAT
[SRA]
>W1810238329
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
2778965
2779041
+
Ile
GAT
[ENA]
¡û
>W1810423354
PYSV01000013
Deinococcota
Deinococcus arcticus OD32 [PYSV]
128786
128710
-
Ile
GAT
[ENA]
¡û
>C151063642
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
2955535
2955611
+
Ile
GAT
[Ensembl]
¡û
>C151081918
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
937415
937339
-
Ile
GAT
[Ensembl]
¡û
>C10105342
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
886348
886424
+
Ile
GAT
[Ensembl]
¡û
>C11107218
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
292261
292337
+
Ile
GAT
[Ensembl]
¡û
>C11107269
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
886348
886424
+
Ile
GAT
[Ensembl]
¡û
>C121002059
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
1211669
1211745
+
Ile
GAT
[Ensembl]
¡û
>C161034763
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
2438812
2438736
-
Ile
GAT
[Ensembl]
¡û
>C161061585
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
884233
884309
+
Ile
GAT
[Ensembl]
¡û
>C161082987
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
1841220
1841144
-
Ile
GAT
-
¡û
>W1610061573
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
977050
977126
+
Ile
GAT
[ENA]
¡û
>W1610638984
LIYN01000087
Deinococcota
Deinococcus sp. UR1 [LIYN]
5537
5461
-
Ile
GAT
[ENA]
¡û
>W1610737914
LMOM01000054
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
162757
162833
+
Ile
GAT
[ENA]
¡û
>W1710059238
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
977050
977126
+
Ile
GAT
[ENA]
¡û
>W1710542268
FNZA01000005
Deinococcota
Deinococcus reticulitermitis [FNZA]
176853
176777
-
Ile
GAT
[ENA]
¡û
>W1710605322
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
2538782
2538706
-
Ile
GAT
[ENA]
¡û
>W1710774878
LIYN01000087
Deinococcota
Deinococcus sp. UR1 [LIYN]
5537
5461
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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