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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145521 (47 seq.)
>W131104583
APCS01000067
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
10963
10887
-
Arg
ACG
[ENA]
¡û
>W131213882
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1412369
1412445
+
Arg
ACG
[ENA]
¡û
>W131237116
AUMV01000014
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
71139
71063
-
Arg
ACG
[ENA]
¡û
>W1711743938
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
878017
877941
-
Arg
ACG
[ENA]
¡û
>W1712080659
NHMK01000011
Deinococcota
Deinococcus indicus [NHMK]
54177
54253
+
Arg
ACG
[ENA]
¡û
>W1712080660
NHMK01000011
Deinococcota
Deinococcus indicus [NHMK]
54422
54498
+
Arg
ACG
[ENA]
¡û
>C007946
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181867
2181943
+
Arg
ACG
[Ensembl]
¡û
>WENV180232139
OBCO01000134
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180233118
OBCP01000130
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180569800
OCLR01000473
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
16198
16274
+
Arg
ACG
[ENA]
¢þ
>WENV180570749
OCLS01000473
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
16203
16279
+
Arg
ACG
[ENA]
¢þ
>WENV180571485
OCLT01000132
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180573738
OCLW01000132
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180639795
OCRL01000134
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180640727
OCRM01000132
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>W141154765
AXLL01000034
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
9803
9879
+
Arg
ACG
[ENA]
¡û
>W141169945
AXWT01000048
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
418
494
+
Arg
ACG
[ENA]
¡û
>C181134313
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
2068214
2068138
-
Arg
ACG
-
¡û
>C181185103
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
2802666
2802590
-
Arg
ACG
-
¡û
>C181185104
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
2802438
2802362
-
Arg
ACG
-
¡û
>C181196489
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
80987
80911
-
Arg
ACG
-
¡û
>C191018456
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2562869
2562793
-
Arg
ACG
-
¡û
>W141561468
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
37348
37272
-
Arg
ACG
[ENA]
¡û
>W141702060
JMLF01000004
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
37380
37304
-
Arg
ACG
[ENA]
¡û
>W141711950
JMQF01000033
Deinococcota
Deinococcus sp. RL [JMQF]
97204
97280
+
Arg
ACG
[ENA]
¡û
>C09103887
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
389005
389081
+
Arg
ACG
[Ensembl]
¡û
>W1911788289
QYCQ01000233
Deinococcota
Deinococcus sp. RM [QYCQ]
27588
27512
-
Arg
ACG
[ENA]
¡û
>W1911788290
QYCQ01000233
Deinococcota
Deinococcus sp. RM [QYCQ]
27359
27283
-
Arg
ACG
[ENA]
¡û
>W1810238318
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
1808923
1808999
+
Arg
ACG
[ENA]
¡û
>W1810423326
PYSV01000006
Deinococcota
Deinococcus arcticus OD32 [PYSV]
193081
193005
-
Arg
ACG
[ENA]
¡û
>C151063647
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
3037159
3037235
+
Arg
ACG
[Ensembl]
¡û
>C151081915
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1300115
1300039
-
Arg
ACG
[Ensembl]
¡û
>C151081916
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1299887
1299811
-
Arg
ACG
[Ensembl]
¡û
>C10105348
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181867
2181943
+
Arg
ACG
[Ensembl]
¡û
>C11107163
CP002454
Deinococcota
Deinococcus maricopensis DSM 21211 [CP002454]
690736
690660
-
Arg
ACG
[Ensembl]
¡û
>C11107275
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181867
2181943
+
Arg
ACG
[Ensembl]
¡û
>C121002086
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2572825
2572749
-
Arg
ACG
[Ensembl]
¡û
>C161061608
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
2752299
2752223
-
Arg
ACG
[Ensembl]
¡û
>C161061609
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
2752070
2751994
-
Arg
ACG
[Ensembl]
¡û
>C161082993
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
542897
542821
-
Arg
ACG
-
¡û
>W1610061570
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
595049
595125
+
Arg
ACG
[ENA]
¡û
>W1610061571
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
595272
595348
+
Arg
ACG
[ENA]
¡û
>W1610639008
LIYN01000363
Deinococcota
Deinococcus sp. UR1 [LIYN]
438
514
+
Arg
ACG
[ENA]
¡û
>W1710059235
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
595049
595125
+
Arg
ACG
[ENA]
¡û
>W1710059236
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
595272
595348
+
Arg
ACG
[ENA]
¡û
>W1710542278
FNZA01000016
Deinococcota
Deinococcus reticulitermitis [FNZA]
22771
22695
-
Arg
ACG
[ENA]
¡û
>W1710774902
LIYN01000363
Deinococcota
Deinococcus sp. UR1 [LIYN]
438
514
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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