This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145541 (65 seq.)
>W1710792792
LJOP01000058
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
11876
11949
+
Arg
ACG
[ENA]
¡û
>W1710792817
LJOQ01000007
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
12419
12492
+
Arg
ACG
[ENA]
¡û
>W1710792889
LJOS01000051
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
4499
4426
-
Arg
ACG
[ENA]
¡û
>W1710792926
LJOU01000073
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
6828
6901
+
Arg
ACG
[ENA]
¡û
>W1710792973
LJOV01000353
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
3361
3288
-
Arg
ACG
[ENA]
¡û
>W1710793015
LJOW01000073
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
21036
20963
-
Arg
ACG
[ENA]
¡û
>W1710793050
LJOX01000003
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
23807
23734
-
Arg
ACG
[ENA]
¡û
>W1710793096
LJOY01000003
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
102176
102249
+
Arg
ACG
[ENA]
¡û
>W1711092426
LTEC01000002
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
771
844
+
Arg
ACG
[ENA]
¡û
>W1711283622
LZQD01000007
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
184475
184402
-
Arg
ACG
[ENA]
¡û
>W1711666708
MRCF01000001
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
102431
102358
-
Arg
ACG
[ENA]
¡û
>W1711979767
NDGV01000041
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
60921
60994
+
Arg
ACG
[ENA]
¡û
>W131065844
ANNX01000100
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
119832
119908
+
Arg
ACG
[ENA]
¡û
>W131089975
AOFE01000018
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
158675
158602
-
Arg
ACG
[ENA]
¡û
>W131110109
APIY01000260
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
648
575
-
Arg
ACG
[ENA]
¡û
>W131110121
APIZ01000001
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
10444
10517
+
Arg
ACG
[ENA]
¡û
>w021716
AAVW01000145
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
3638
3714
+
Arg
ACG
[ENA]
¡û
>W141022928
AJWF01000012
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
973608
973681
+
Arg
ACG
[ENA]
¡û
>W141038765
ALWD01000136
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
172584
172511
-
Arg
ACG
[ENA]
¡û
>WENV181841060
OGVQ01000071
[OGVQ] freshwater metagenome; freshwater
12705
12631
-
Arg
ACG
[ENA]
¢þ
>W141221430
AZYY01000188
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
7363
7290
-
Arg
ACG
[ENA]
¡û
>WENV183254818
OLRJ01014323
[OLRJ] human gut metagenome; faeces
2216
2142
-
Arg
ACG
[ENA]
¢þ
>WENV170983037
MWVV01003530
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
2312
2385
+
Arg
ACG
[ENA]
¢þ
>WENV170988330
MWVX01459011
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
124
197
+
Arg
ACG
[ENA]
¢þ
>WENV170990743
MWWA01037581
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
906
833
-
Arg
ACG
[ENA]
¢þ
>WENV170990870
MWWA01062876
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
591
664
+
Arg
ACG
[ENA]
¢þ
>WENV170992684
MWWB01065810
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
608
535
-
Arg
ACG
[ENA]
¢þ
>WENV170993923
MWWC01042732
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
143
70
-
Arg
ACG
[ENA]
¢þ
>WENV170994112
MWWD01014261
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
139
66
-
Arg
ACG
[ENA]
¢þ
>WENV170994507
MWWE01002089
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
1447
1374
-
Arg
ACG
[ENA]
¢þ
>CHL1810014657
KM462865
Viridiplantae
Edaphochlorella mirabilis (KM462865)
152951
153024
+
Arg
ACG
[ENA]
¡û
>CHL1810014692
KM462866
Viridiplantae
Pseudochlorella signiensis (KM462866)
188386
188312
-
Arg
ACG
[ENA]
¡û
>CHL1810014751
KM462868
Viridiplantae
Koliella longiseta (KM462868)
162519
162592
+
Arg
ACG
[ENA]
¡û
>C181043647
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
2110508
2110435
-
Arg
ACG
-
¡û
>C181137740
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
7008273
7008346
+
Arg
ACG
-
¡û
>W1910175563
BJCF01000048
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
28186
28259
+
Arg
ACG
[ENA]
¡û
>W1911118654
NOLI01000031
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
7852
7925
+
Arg
ACG
[ENA]
¡û
>W1911118821
NOLK01000073
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
10901
10974
+
Arg
ACG
[ENA]
¡û
>W1911581790
PGEM01000113
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
8867
8793
-
Arg
ACG
[ENA]
¡û
>W1911638350
PVWL01000183
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
645
718
+
Arg
ACG
[ENA]
¡û
>W1911638393
PVWN01000001
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
244376
244303
-
Arg
ACG
[ENA]
¡û
>W1911641178
PYCI01000063
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
34191
34118
-
Arg
ACG
[ENA]
¡û
>W1911741983
QVFW01000004
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
158025
158098
+
Arg
ACG
[ENA]
¡û
>C151004172
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
3860418
3860491
+
Arg
ACG
[Ensembl]
¡û
>C151082981
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
611952
611879
-
Arg
ACG
-
¡û
>W1511364891
JSDP01000030
Cyanobacteriota
Aphanizomenon flos-aquae 2012/KM1/D3 [JSDP]
6795
6868
+
Arg
ACG
[ENA]
¡û
>W1511401800
JTJC01000086
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
3750726
3750653
-
Arg
ACG
[ENA]
¡û
>C161005358
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
1513722
1513649
-
Arg
ACG
[Ensembl]
¡û
>W1610084851
CDHJ01000036
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
114968
115041
+
Arg
ACG
[ENA]
¡û
>C131004537
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
2817479
2817406
-
Arg
ACG
[Ensembl]
¡û
>C131004718
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
5479093
5479020
-
Arg
ACG
[Ensembl]
¡û
>W1610656717
LJOP01000058
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
11876
11949
+
Arg
ACG
[ENA]
¡û
>W1610656742
LJOQ01000007
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
12419
12492
+
Arg
ACG
[ENA]
¡û
>W1610656853
LJOS01000051
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
4499
4426
-
Arg
ACG
[ENA]
¡û
>W1610656863
LJOT01000001
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
47988
48061
+
Arg
ACG
[ENA]
¡û
>W1610656930
LJOU01000073
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
6828
6901
+
Arg
ACG
[ENA]
¡û
>W1610656977
LJOV01000353
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
3361
3288
-
Arg
ACG
[ENA]
¡û
>W1610657019
LJOW01000073
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
21036
20963
-
Arg
ACG
[ENA]
¡û
>W1610657054
LJOX01000003
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
23807
23734
-
Arg
ACG
[ENA]
¡û
>W1610657100
LJOY01000003
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
102176
102249
+
Arg
ACG
[ENA]
¡û
>W1610926464
LTEC01000002
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
771
844
+
Arg
ACG
[ENA]
¡û
>W1610979379
LWAJ01000027
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
39625
39698
+
Arg
ACG
[ENA]
¡û
>W1710087966
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
1604693
1604766
+
Arg
ACG
[ENA]
¡û
>W1710088024
BDUC01000003
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
925586
925659
+
Arg
ACG
[ENA]
¡û
>W1710089713
CDHJ01000036
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
114968
115041
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK