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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145596 (12 seq.)
>WENV183711846
PDWI01082171
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3097
3021
-
Arg
TCT
[ENA]
¢þ
>WENV183712287
PDWI01094754
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1007
931
-
Arg
TCT
[ENA]
¢þ
>C181019027
CP016303
Gammaproteobacteria
Candidatus Hamiltonella defensa [Bemisia tabaci] MEAM1 [CP016303]
646032
646108
+
Arg
TCT
-
¡û
>W1930005104
FRDB01000170
Gammaproteobacteria
Candidatus Sodalis sp. SoCistrobi [FRDB]
1715
1639
-
Arg
TCT
[ENA]
¡û
>C09103178
CP001277
Gammaproteobacteria
Candidatus Hamiltonella defensa 5AT [Acyrthosiphon pisum] T5A [CP001277]
1498771
1498847
+
Arg
TCT
[Ensembl]
¡û
>C151009204
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
4290049
4289973
-
Arg
TCT
[Ensembl]
¡û
>W1510058845
CCVN01000012
Gammaproteobacteria
Candidatus Hamiltonella defensa defensa [Bemisia tabaci] [CCVN]
18925
19001
+
Arg
TCT
[ENA]
¡û
>C163001664
LN999831
Gammaproteobacteria
Candidatus Mikella endobia [LN999831]
295795
295720
-
Arg
TCT
[Ensembl]
¡û
>C163001682
LT594522
Gammaproteobacteria
secondary endosymbiont of Trabutina mannipara [LT594522]
154088
154013
-
Arg
TCT
[Ensembl]
¡û
>W1610596627
LECR01000077
Gammaproteobacteria
Sodalis-like endosymbiont of Proechinophthirus fluctus [LECR]
10308
10385
+
Arg
TCT
[ENA]
¡û
>W1710513301
FNAA01000015
Gammaproteobacteria
Proteus mirabilis [FNAA]
78719
78643
-
Arg
TCT
[ENA]
¡û
>W1710717632
LECR01000077
Gammaproteobacteria
Sodalis-like endosymbiont of Proechinophthirus fluctus [LECR]
10308
10385
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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