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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146091 (31 seq.)
>W1711137189
LVBB01000084
Planctomycetota
Phycisphaerales bacterium Planc_01 [LVBB]
39308
39383
+
Asp
GTC
[ENA]
¡û
>W1711420973
MHXU01000158
Planctomycetota
Planctomycetes bacterium GWC2_45_44 [MHXU]
11413
11488
+
Asp
GTC
[ENA]
¡û
>W1711421054
MHXZ01000008
Planctomycetota
Planctomycetes bacterium GWF2_41_51 [MHXZ]
41175
41100
-
Asp
GTC
[ENA]
¡û
>W1711421096
MHYA01000009
Planctomycetota
Planctomycetes bacterium GWF2_42_9 [MHYA]
3340
3415
+
Asp
GTC
[ENA]
¡û
>W1711421124
MHYA01000142
Planctomycetota
Planctomycetes bacterium GWF2_42_9 [MHYA]
44611
44685
+
Asp
GTC
[ENA]
¡û
>W1711421276
MHYG01000127
Planctomycetota
Planctomycetes bacterium RBG_13_62_9 [MHYG]
13351
13426
+
Asp
GTC
[ENA]
¡û
>C171097485
CP019633
Planctomycetota
Sedimentisphaera cyanobacteriorum L21-RPul-D3 [CP019633]
389392
389466
+
Asp
GTC
-
¡û
>C171097486
CP019633
Planctomycetota
Sedimentisphaera cyanobacteriorum L21-RPul-D3 [CP019633]
389490
389564
+
Asp
GTC
-
¡û
>C171097718
CP019646
Planctomycetota
Limihaloglobus sulfuriphilus SM-Chi-D1 [CP019646]
1619733
1619807
+
Asp
GTC
-
¡û
>C171099890
CP019791
Planctomycetota
Anaerohalosphaera lusitana ST-NAGAB-D1 [CP019791]
2187447
2187520
+
Asp
GTC
-
¡û
>C171114991
CP021023
Planctomycetota
Sedimentisphaera salicampi ST-PulAB-D4 [CP021023]
2674359
2674433
+
Asp
GTC
-
¡û
>C171114992
CP021023
Planctomycetota
Sedimentisphaera salicampi ST-PulAB-D4 [CP021023]
2674458
2674533
+
Asp
GTC
-
¡û
>WENV180298626
OBJA01482041
[OBJA] soil metagenome; sediment, water from around vicinity
142
68
-
Asp
GTC
[ENA]
¢þ
>WENV180354194
OBLQ011463626
[OBLQ] soil metagenome; soil
105
180
+
Asp
GTC
[ENA]
¢þ
>WENV183512645
OMKS01000977
[OMKS] sediment metagenome; hot spring sediment
1107
1033
-
Asp
GTC
[ENA]
¢þ
>WENV183515134
OMKS01047389
[OMKS] sediment metagenome; hot spring sediment
1277
1352
+
Asp
GTC
[ENA]
¢þ
>WENV183516442
OMKS01178897
[OMKS] sediment metagenome; hot spring sediment
418
343
-
Asp
GTC
[ENA]
¢þ
>WENV183678520
ORJL011887221
[ORJL] groundwater metagenome; groundwater
209
135
-
Asp
GTC
[ENA]
¢þ
>WENV183702063
PDVH01010931
[PDVH] alkali sediment metagenome; glacial lake sediment
1454
1529
+
Asp
GTC
[ENA]
¢þ
>WENV170007343
AMWB02109770
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
515
440
-
Asp
GTC
[ENA]
¢þ
>WENV170007960
AMWB02167732
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
605
530
-
Asp
GTC
[ENA]
¢þ
>WENV170018371
BARW01006358
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
797
871
+
Asp
GTC
[ENA]
¢þ
>WENV170611881
FUWD012428890
[FUWD] metagenome; unknown
97
22
-
Asp
GTC
[ENA]
¢þ
>WENV170671892
LAHU01210428
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
280
355
+
Asp
GTC
[ENA]
¢þ
>WENV170718542
LSQX01080706
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1586
1662
+
Asp
GTC
[ENA]
¢þ
>WENV170969874
MTKW01042577
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1003
928
-
Asp
GTC
[ENA]
¢þ
>W1910912917
NHPQ01000035
Planctomycetota
Sedimentisphaera salicampi SM-PulAB-D3 [NHPQ]
35110
35184
+
Asp
GTC
[ENA]
¡û
>W1910912918
NHPQ01000035
Planctomycetota
Sedimentisphaera salicampi SM-PulAB-D3 [NHPQ]
35209
35284
+
Asp
GTC
[ENA]
¡û
>SRA1026388
SRR035085.199360
454 Sequencing (SRP001806)
319
244
-
Asp
GTC
[SRA]
>SRA1026492
SRR035085.215965
454 Sequencing (SRP001806)
39
114
+
Asp
GTC
[SRA]
>W1610948309
LVBB01000084
Planctomycetota
Phycisphaerales bacterium Planc_01 [LVBB]
39308
39383
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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