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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146617 (55 seq.)
>W1710876700
LMPL01000003
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
51945
52019
+
Leu
CAA
[ENA]
¡û
>W1710909544
LNQO01000008
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
190947
190873
-
Leu
CAA
[ENA]
¡û
>W1711069497
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
124492
124416
-
Leu
CAA
[ENA]
¡û
>W1711080731
LSRG01000013
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
13675
13599
-
Leu
CAA
[ENA]
¡û
>W1711139730
LVFF01000021
Actinomycetota
Dietzia maris [LVFF]
48011
48087
+
Leu
CAA
[ENA]
¡û
>W1711187582
LWPP01000314
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
17370
17446
+
Leu
CAA
[ENA]
¡û
>W1711221498
LXRE01000015
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
106666
106590
-
Leu
CAA
[ENA]
¡û
>W1711234527
LYCQ01000311
Actinomycetota
Nocardia farcinica [LYCQ]
8027
8103
+
Leu
CAA
[ENA]
¡û
>W1711281971
LZMP01000057
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
152962
152886
-
Leu
CAA
[ENA]
¡û
>W1711460548
MJEI01000081
Actinomycetota
Williamsia sp. 1135 [MJEI]
60758
60834
+
Leu
CAA
[ENA]
¡û
>W1711460598
MJEJ01000033
Actinomycetota
Williamsia sp. 1138 [MJEJ]
77898
77974
+
Leu
CAA
[ENA]
¡û
>W1711776916
MVKV01000010
Actinomycetota
Gordonia sp. IITR100 [MVKV]
102253
102329
+
Leu
CAA
[ENA]
¡û
>W1712061716
NGFO01000035
Actinomycetota
Gordonia lacunae [NGFO]
35296
35220
-
Leu
CAA
[ENA]
¡û
>W131156554
AQPW01000009
Actinomycetota
Gordonia terrae C-6 [AQPW]
74386
74310
-
Leu
CAA
[ENA]
¡û
>W131160866
AQXB01000005
Actinomycetota
Corynebacterium mastitidis DSM 44356 [AQXB]
40905
40981
+
Leu
CAA
[ENA]
¡û
>W131185118
ARTM01000026
Actinomycetota
Nocardia sp. 348MFTsu5.1 [ARTM]
144725
144649
-
Leu
CAA
[ENA]
¡û
>W141194607
AYTE01000031
Actinomycetota
Williamsia sp. D3 [AYTE]
280341
280417
+
Leu
CAA
[ENA]
¡û
>W141233311
BAVQ01000003
Actinomycetota
Tomitella biformata AHU 1821 [BAVQ]
51960
52036
+
Leu
CAA
[ENA]
¡û
>WENV170566068
FKKE01005711
[FKKE] freshwater metagenome; freshwater
4288
4364
+
Leu
CAA
[ENA]
¢þ
>WENV170668538
LAFT01017844
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
169
95
-
Leu
CAA
[ENA]
¢þ
>C181181622
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
3280904
3280978
+
Leu
CAA
-
¡û
>C191020801
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
2189547
2189471
-
Leu
CAA
-
¡û
>W141756214
JNXA01000021
Actinomycetota
Gordonia terrae [JNXA]
50446
50520
+
Leu
CAA
[ENA]
¡û
>W141757954
JNYH01000037
Actinomycetota
Kutzneria albida [JNYH]
30255
30181
-
Leu
CAA
[ENA]
¡û
>W141758776
JNYV01000007
Actinomycetota
Kitasatospora arboriphila [JNYV]
105928
105852
-
Leu
CAA
[ENA]
¡û
>W141760724
JOAF01000007
Actinomycetota
Microbispora sp. NRRL B-24597 [JOAF]
105928
105852
-
Leu
CAA
[ENA]
¡û
>W1911814578
QZFT01000034
Actinomycetota
Pseudonocardiaceae bacterium YIM PH 21723 [QZFT]
37043
37119
+
Leu
CAA
[ENA]
¡û
>W1810069197
PEBD01000002
Actinomycetota
Williamsia marianensis BULT 1.1 [PEBD]
55042
54966
-
Leu
CAA
[ENA]
¡û
>W1810189555
PKJC01000018
Actinomycetota
Gordonia terrae UMB0777 [PKJC]
95071
95145
+
Leu
CAA
[ENA]
¡û
>W1810577754
QEOM01000001
Actinomycetota
Williamsia marianensis DSM 44944 [QEOM]
72952
73028
+
Leu
CAA
[ENA]
¡û
>W1810658308
QJJF01000014
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
76456
76531
+
Leu
CAA
[ENA]
¡û
>W1810671192
QJSP01000009
Actinomycetota
Williamsia limnetica DSM 45521 [QJSP]
237651
237575
-
Leu
CAA
[ENA]
¡û
>C151017643
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
2880818
2880744
-
Leu
CAA
[Ensembl]
¡û
>W1511518900
JXYP01000021
Actinomycetota
Williamsia herbipolensis ARP1 [JXYP]
52076
52152
+
Leu
CAA
[ENA]
¡û
>C161100046
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
3278133
3278207
+
Leu
CAA
-
¡û
>W1610069401
BCSL01000021
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
22401
22325
-
Leu
CAA
[ENA]
¡û
>W1610069908
BCSW01000017
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
42827
42903
+
Leu
CAA
[ENA]
¡û
>W1610078044
BDAP01000005
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
73090
73166
+
Leu
CAA
[ENA]
¡û
>W121124361
BAFD01000007
Actinomycetota
Gordonia terrae NBRC 100016 [BAFD]
50347
50421
+
Leu
CAA
[ENA]
¡û
>W121126558
BAHB01000084
Actinomycetota
Gordonia rubripertincta NBRC 101908 [BAHB]
2453
2527
+
Leu
CAA
[ENA]
¡û
>C131001579
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
3208923
3208999
+
Leu
CAA
[Ensembl]
¡û
>W1610515312
FMAX01000008
Actinomycetota
Gordonia sp. v-85 [FMAX]
190947
190873
-
Leu
CAA
[ENA]
¡û
>W1610638767
LIYC01000015
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
69315
69391
+
Leu
CAA
[ENA]
¡û
>W1610739046
LMPL01000003
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
51945
52019
+
Leu
CAA
[ENA]
¡û
>W1610767903
LNQO01000008
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
190947
190873
-
Leu
CAA
[ENA]
¡û
>W1610910025
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
124492
124416
-
Leu
CAA
[ENA]
¡û
>W1610919598
LSRG01000013
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
13675
13599
-
Leu
CAA
[ENA]
¡û
>W1610950738
LVFF01000021
Actinomycetota
Dietzia maris [LVFF]
48011
48087
+
Leu
CAA
[ENA]
¡û
>W1611006016
LXRE01000015
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
106666
106590
-
Leu
CAA
[ENA]
¡û
>W1611041256
LZMP01000057
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
152962
152886
-
Leu
CAA
[ENA]
¡û
>W1710066774
BCSL01000021
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
22401
22325
-
Leu
CAA
[ENA]
¡û
>W1710067281
BCSW01000017
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
42827
42903
+
Leu
CAA
[ENA]
¡û
>W1710076603
BDAP01000005
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
73090
73166
+
Leu
CAA
[ENA]
¡û
>W1710501002
FMAX01000008
Actinomycetota
Gordonia sp. v-85 [FMAX]
190947
190873
-
Leu
CAA
[ENA]
¡û
>W1710774598
LIYC01000015
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
69315
69391
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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