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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146642 (103 seq.)
>W1710799883
LJVG01000014
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
99175
99099
-
Trp
CCA
[ENA]
¡û
>W1710799948
LJVG01000044
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
192077
192001
-
Trp
CCA
[ENA]
¡û
>W1710803954
LJYX01000006
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
531661
531585
-
Trp
CCA
[ENA]
¡û
>W1710804021
LJYX01000021
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
638264
638188
-
Trp
CCA
[ENA]
¡û
>W1711027056
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
118157
118081
-
Trp
CCA
[ENA]
¡û
>W131177221
ARKQ01000013
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
704
780
+
Trp
CCA
[ENA]
¡û
>W131177233
ARKQ01000031
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
111371
111447
+
Trp
CCA
[ENA]
¡û
>C006827
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
5064160
5064084
-
Trp
CCA
[Ensembl]
¡û
>C006859
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1139363
1139287
-
Trp
CCA
[Ensembl]
¡û
>WENV182542709
OJAZ01000911
[OJAZ] seawater metagenome; Sea water
2485
2409
-
Trp
CCA
[ENA]
¢þ
>WENV182542906
OJAZ01006583
[OJAZ] seawater metagenome; Sea water
1683
1607
-
Trp
CCA
[ENA]
¢þ
>WENV182543406
OJBB01000050
[OJBB] seawater metagenome; Sea water
52355
52279
-
Trp
CCA
[ENA]
¢þ
>WENV182543505
OJBB01001391
[OJBB] seawater metagenome; Sea water
516
592
+
Trp
CCA
[ENA]
¢þ
>WENV182543521
OJBB01002083
[OJBB] seawater metagenome; Sea water
590
666
+
Trp
CCA
[ENA]
¢þ
>WENV182545198
OJBM01008151
[OJBM] seawater metagenome; Sea water
113
37
-
Trp
CCA
[ENA]
¢þ
>WENV182546979
OJBR01000042
[OJBR] seawater metagenome; Sea water
61734
61658
-
Trp
CCA
[ENA]
¢þ
>WENV182547499
OJBS01012771
[OJBS] seawater metagenome; Sea water
756
680
-
Trp
CCA
[ENA]
¢þ
>WENV182554664
OJCW01000700
[OJCW] seawater metagenome; Sea water
5315
5239
-
Trp
CCA
[ENA]
¢þ
>WENV182559098
OJDO01001156
[OJDO] seawater metagenome; Sea water
3816
3740
-
Trp
CCA
[ENA]
¢þ
>WENV182560436
OJDU01001077
[OJDU] seawater metagenome; Sea water
1584
1508
-
Trp
CCA
[ENA]
¢þ
>WENV182567547
OJEO01006203
[OJEO] seawater metagenome; Sea water
793
869
+
Trp
CCA
[ENA]
¢þ
>WENV182567670
OJEP01000041
[OJEP] seawater metagenome; Sea water
50801
50725
-
Trp
CCA
[ENA]
¢þ
>WENV182568189
OJER01000780
[OJER] seawater metagenome; Sea water
178
102
-
Trp
CCA
[ENA]
¢þ
>WENV182568864
OJEX01000229
[OJEX] seawater metagenome; Sea water
80
4
-
Trp
CCA
[ENA]
¢þ
>WENV182578558
OJGO01001093
[OJGO] seawater metagenome; Sea water
4595
4671
+
Trp
CCA
[ENA]
¢þ
>WENV182578559
OJGO01001119
[OJGO] seawater metagenome; Sea water
5686
5610
-
Trp
CCA
[ENA]
¢þ
>WENV182578582
OJGO01001691
[OJGO] seawater metagenome; Sea water
2077
2153
+
Trp
CCA
[ENA]
¢þ
>WENV182578846
OJGP01006861
[OJGP] seawater metagenome; Sea water
1182
1106
-
Trp
CCA
[ENA]
¢þ
>WENV182585376
OJHH01013941
[OJHH] seawater metagenome; Sea water
855
779
-
Trp
CCA
[ENA]
¢þ
>WENV182586461
OJHK01000532
[OJHK] seawater metagenome; Sea water
995
919
-
Trp
CCA
[ENA]
¢þ
>WENV182588215
OJHP01001798
[OJHP] seawater metagenome; Sea water
113
189
+
Trp
CCA
[ENA]
¢þ
>WENV182588311
OJHR01001300
[OJHR] seawater metagenome; Sea water
1250
1174
-
Trp
CCA
[ENA]
¢þ
>WENV182592519
OJIR01002406
[OJIR] seawater metagenome; Sea water
441
517
+
Trp
CCA
[ENA]
¢þ
>WENV182592531
OJIR01002897
[OJIR] seawater metagenome; Sea water
410
486
+
Trp
CCA
[ENA]
¢þ
>WENV183056158
OLHI01000442
[OLHI] seawater metagenome; Sea water
398
474
+
Trp
CCA
[ENA]
¢þ
>WENV183057718
OLHM01001333
[OLHM] seawater metagenome; Sea water
440
516
+
Trp
CCA
[ENA]
¢þ
>WENV183057777
OLHM01004218
[OLHM] seawater metagenome; Sea water
672
596
-
Trp
CCA
[ENA]
¢þ
>WENV183064714
OLII01000101
[OLII] seawater metagenome; Sea water
20205
20129
-
Trp
CCA
[ENA]
¢þ
>WENV183064819
OLII01000998
[OLII] seawater metagenome; Sea water
9486
9410
-
Trp
CCA
[ENA]
¢þ
>WENV170537170
CEWQ01018915
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
430
506
+
Trp
CCA
[ENA]
¢þ
>WENV170537888
CEWR01036576
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1324
1248
-
Trp
CCA
[ENA]
¢þ
>WENV170609999
FUWD011620666
[FUWD] metagenome; unknown
86
10
-
Trp
CCA
[ENA]
¢þ
>WENV170704246
LLEJ01000546
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2504
2580
+
Trp
CCA
[ENA]
¢þ
>WENV170704255
LLEJ01000658
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1674
1750
+
Trp
CCA
[ENA]
¢þ
>WENV170704730
LLEM01001088
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1424
1350
-
Trp
CCA
[ENA]
¢þ
>WENV170704753
LLEM01004896
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
494
420
-
Trp
CCA
[ENA]
¢þ
>WENV170704828
LLEN01001433
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
287
211
-
Trp
CCA
[ENA]
¢þ
>WENV170780336
MAAA01029006
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
805
881
+
Trp
CCA
[ENA]
¢þ
>WENV170780987
MAAB01028919
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
9250
9174
-
Trp
CCA
[ENA]
¢þ
>WENV170780997
MAAB01028929
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
369
445
+
Trp
CCA
[ENA]
¢þ
>WENV170781000
MAAB01028988
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
32567
32491
-
Trp
CCA
[ENA]
¢þ
>WENV170781038
MAAB01029158
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
815
891
+
Trp
CCA
[ENA]
¢þ
>WENV170781071
MAAB01029285
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
9433
9357
-
Trp
CCA
[ENA]
¢þ
>WENV170781076
MAAB01029319
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
620
696
+
Trp
CCA
[ENA]
¢þ
>WENV170781082
MAAB01029361
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
45561
45485
-
Trp
CCA
[ENA]
¢þ
>WENV170781136
MAAB01029459
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4172
4096
-
Trp
CCA
[ENA]
¢þ
>WENV170781168
MAAB01029584
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14487
14563
+
Trp
CCA
[ENA]
¢þ
>WENV170781243
MAAB01030100
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6301
6225
-
Trp
CCA
[ENA]
¢þ
>WENV170781274
MAAB01030508
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3860
3936
+
Trp
CCA
[ENA]
¢þ
>WENV170781615
MAAB01038758
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
13415
13339
-
Trp
CCA
[ENA]
¢þ
>WENV170782070
MAAC01007937
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2026
1950
-
Trp
CCA
[ENA]
¢þ
>WENV170782439
MAAC01009940
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
22015
22091
+
Trp
CCA
[ENA]
¢þ
>WENV170782475
MAAC01010137
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4845
4769
-
Trp
CCA
[ENA]
¢þ
>WENV170782494
MAAC01010168
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
284
360
+
Trp
CCA
[ENA]
¢þ
>WENV170782515
MAAC01010176
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
124620
124696
+
Trp
CCA
[ENA]
¢þ
>WENV170782908
MAAC01012042
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
490
566
+
Trp
CCA
[ENA]
¢þ
>WENV170782915
MAAC01012072
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2021
1945
-
Trp
CCA
[ENA]
¢þ
>WENV170782955
MAAC01012159
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
338
414
+
Trp
CCA
[ENA]
¢þ
>WENV170783146
MAAC01014317
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
76
1
-
Trp
CCA
[ENA]
¢þ
>WENV170783168
MAAC01014634
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
274
350
+
Trp
CCA
[ENA]
¢þ
>WENV170783196
MAAC01014827
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
19217
19141
-
Trp
CCA
[ENA]
¢þ
>WENV170783219
MAAC01015067
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1915
1991
+
Trp
CCA
[ENA]
¢þ
>WENV170783225
MAAC01015099
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6540
6616
+
Trp
CCA
[ENA]
¢þ
>WENV170783233
MAAC01015210
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
39
115
+
Trp
CCA
[ENA]
¢þ
>WENV170783979
MAAC01020240
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
77
1
-
Trp
CCA
[ENA]
¢þ
>C191117227
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4191111
4191035
-
Trp
CCA
-
¡û
>C191130458
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1513905
1513981
+
Trp
CCA
-
¡û
>C191130481
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
2217677
2217601
-
Trp
CCA
-
¡û
>W1911770189
QXIO01000001
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
124142
124218
+
Trp
CCA
[ENA]
¡û
>W1911770250
QXIO01000020
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
508
584
+
Trp
CCA
[ENA]
¡û
>W1810155072
PJAI01000015
Gammaproteobacteria
Colwellia echini A3T [PJAI]
185170
185094
-
Trp
CCA
[ENA]
¡û
>W1810155094
PJAI01000058
Gammaproteobacteria
Colwellia echini A3T [PJAI]
19039
18963
-
Trp
CCA
[ENA]
¡û
>W1810155381
PJAQ01000066
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
548631
548555
-
Trp
CCA
[ENA]
¡û
>W1810155386
PJAQ01000067
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
22521
22445
-
Trp
CCA
[ENA]
¡û
>W1810155537
PJAU01000031
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
265654
265578
-
Trp
CCA
[ENA]
¡û
>W1810155596
PJAU01000059
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
359374
359450
+
Trp
CCA
[ENA]
¡û
>W1810155967
PJBA01000001
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
200608
200684
+
Trp
CCA
[ENA]
¡û
>W1810156044
PJBA01000018
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1087590
1087514
-
Trp
CCA
[ENA]
¡û
>W1810735861
QOLD01000016
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
16428
16352
-
Trp
CCA
[ENA]
¡û
>W1810735905
QOLD01000070
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
41580
41656
+
Trp
CCA
[ENA]
¡û
>W1511322896
JQEC01000041
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
1543
1619
+
Trp
CCA
[ENA]
¡û
>W1511322906
JQEC01000055
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
23294
23218
-
Trp
CCA
[ENA]
¡û
>W1511322943
JQED01000005
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
323626
323550
-
Trp
CCA
[ENA]
¡û
>W1511322994
JQED01000055
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
384483
384407
-
Trp
CCA
[ENA]
¡û
>C161052264
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
4018796
4018720
-
Trp
CCA
[Ensembl]
¡û
>C161052294
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1044413
1044337
-
Trp
CCA
[Ensembl]
¡û
>W1610663840
LJVG01000014
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
99175
99099
-
Trp
CCA
[ENA]
¡û
>W1610663905
LJVG01000044
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
192077
192001
-
Trp
CCA
[ENA]
¡û
>W1610667811
LJYX01000006
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
531661
531585
-
Trp
CCA
[ENA]
¡û
>W1610667878
LJYX01000021
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
638264
638188
-
Trp
CCA
[ENA]
¡û
>W1610875168
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
118157
118081
-
Trp
CCA
[ENA]
¡û
>W1710087334
BDQM01000002
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
150531
150607
+
Trp
CCA
[ENA]
¡û
>W1710087374
BDQM01000046
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
20679
20603
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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