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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146644 (115 seq.)
>W1710799912
LJVG01000036
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
20791
20867
+
Pro
GGG
[ENA]
¡û
>W1710803966
LJYX01000013
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
27952
28028
+
Pro
GGG
[ENA]
¡û
>W1711078271
LSMS01000147
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
12027
12103
+
Pro
GGG
[ENA]
¡û
>W131177249
ARKQ01000038
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
166179
166103
-
Pro
GGG
[ENA]
¡û
>W1711767457
MUZV01000006
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
20925
20849
-
Pro
GGG
[ENA]
¡û
>W1711947451
NBOC01000007
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
94234
94158
-
Pro
GGG
[ENA]
¡û
>W1711947506
NBOD01000006
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
302299
302375
+
Pro
GGG
[ENA]
¡û
>W1711947562
NBOE01000005
Gammaproteobacteria
Colwellia polaris [NBOE]
3683
3607
-
Pro
GGG
[ENA]
¡û
>W1711947608
NBOF01000001
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
812543
812619
+
Pro
GGG
[ENA]
¡û
>W1711947717
NBOG01000003
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
153122
153046
-
Pro
GGG
[ENA]
¡û
>C171034491
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
4074096
4074020
-
Pro
GGG
-
¡û
>C171034518
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
111629
111705
+
Pro
GGG
-
¡û
>C171108373
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
4276726
4276802
+
Pro
GGG
-
¡û
>WENV182540203
OJAF01000032
[OJAF] seawater metagenome; Sea water
2394
2470
+
Pro
GGG
[ENA]
¢þ
>WENV182541854
OJAU01008944
[OJAU] seawater metagenome; Sea water
655
579
-
Pro
GGG
[ENA]
¢þ
>WENV182541998
OJAV01000223
[OJAV] seawater metagenome; Sea water
9173
9249
+
Pro
GGG
[ENA]
¢þ
>WENV182542048
OJAV01000831
[OJAV] seawater metagenome; Sea water
2416
2492
+
Pro
GGG
[ENA]
¢þ
>WENV182542845
OJAZ01003840
[OJAZ] seawater metagenome; Sea water
2197
2273
+
Pro
GGG
[ENA]
¢þ
>WENV182542876
OJAZ01005025
[OJAZ] seawater metagenome; Sea water
623
547
-
Pro
GGG
[ENA]
¢þ
>WENV182543651
OJBC01000070
[OJBC] seawater metagenome; Sea water
3585
3509
-
Pro
GGG
[ENA]
¢þ
>WENV182544578
OJBI01000012
[OJBI] seawater metagenome; Sea water
158686
158762
+
Pro
GGG
[ENA]
¢þ
>WENV182544745
OJBJ01000696
[OJBJ] seawater metagenome; Sea water
4973
4897
-
Pro
GGG
[ENA]
¢þ
>WENV182545095
OJBM01000064
[OJBM] seawater metagenome; Sea water
43261
43185
-
Pro
GGG
[ENA]
¢þ
>WENV182547198
OJBR01009739
[OJBR] seawater metagenome; Sea water
430
506
+
Pro
GGG
[ENA]
¢þ
>WENV182547497
OJBS01012517
[OJBS] seawater metagenome; Sea water
432
508
+
Pro
GGG
[ENA]
¢þ
>WENV182547774
OJBT01003672
[OJBT] seawater metagenome; Sea water
123
47
-
Pro
GGG
[ENA]
¢þ
>WENV182549204
OJBY01000001
[OJBY] seawater metagenome; Sea water
351653
351729
+
Pro
GGG
[ENA]
¢þ
>WENV182549789
OJBZ01000024
[OJBZ] seawater metagenome; Sea water
61775
61851
+
Pro
GGG
[ENA]
¢þ
>WENV182549969
OJBZ01001021
[OJBZ] seawater metagenome; Sea water
8879
8955
+
Pro
GGG
[ENA]
¢þ
>WENV182550213
OJBZ01012181
[OJBZ] seawater metagenome; Sea water
590
666
+
Pro
GGG
[ENA]
¢þ
>WENV182552413
OJCK01000039
[OJCK] seawater metagenome; Sea water
87399
87475
+
Pro
GGG
[ENA]
¢þ
>WENV182554608
OJCW01000115
[OJCW] seawater metagenome; Sea water
31571
31495
-
Pro
GGG
[ENA]
¢þ
>WENV182554663
OJCW01000661
[OJCW] seawater metagenome; Sea water
6401
6477
+
Pro
GGG
[ENA]
¢þ
>WENV182555179
OJCY01007430
[OJCY] seawater metagenome; Sea water
1033
1109
+
Pro
GGG
[ENA]
¢þ
>WENV182556851
OJDH01000294
[OJDH] seawater metagenome; Sea water
21235
21159
-
Pro
GGG
[ENA]
¢þ
>WENV182557076
OJDI01000698
[OJDI] seawater metagenome; Sea water
11262
11338
+
Pro
GGG
[ENA]
¢þ
>WENV182557716
OJDK01003391
[OJDK] seawater metagenome; Sea water
865
941
+
Pro
GGG
[ENA]
¢þ
>WENV182557907
OJDL01000445
[OJDL] seawater metagenome; Sea water
11261
11337
+
Pro
GGG
[ENA]
¢þ
>WENV182558614
OJDN01000031
[OJDN] seawater metagenome; Sea water
47439
47515
+
Pro
GGG
[ENA]
¢þ
>WENV182558788
OJDN01003529
[OJDN] seawater metagenome; Sea water
1074
1150
+
Pro
GGG
[ENA]
¢þ
>WENV182559135
OJDO01002086
[OJDO] seawater metagenome; Sea water
2200
2276
+
Pro
GGG
[ENA]
¢þ
>WENV182559993
OJDR01000098
[OJDR] seawater metagenome; Sea water
23609
23533
-
Pro
GGG
[ENA]
¢þ
>WENV182560453
OJDU01001611
[OJDU] seawater metagenome; Sea water
4089
4013
-
Pro
GGG
[ENA]
¢þ
>WENV182561171
OJDV01011125
[OJDV] seawater metagenome; Sea water
588
512
-
Pro
GGG
[ENA]
¢þ
>WENV182561536
OJDW01003791
[OJDW] seawater metagenome; Sea water
463
539
+
Pro
GGG
[ENA]
¢þ
>WENV182562255
OJDZ01000267
[OJDZ] seawater metagenome; Sea water
31737
31813
+
Pro
GGG
[ENA]
¢þ
>WENV182562326
OJDZ01000897
[OJDZ] seawater metagenome; Sea water
5950
6026
+
Pro
GGG
[ENA]
¢þ
>WENV182564924
OJEF01015752
[OJEF] seawater metagenome; Sea water
614
538
-
Pro
GGG
[ENA]
¢þ
>WENV182565249
OJEH01000707
[OJEH] seawater metagenome; Sea water
6439
6515
+
Pro
GGG
[ENA]
¢þ
>WENV182565854
OJEI01000338
[OJEI] seawater metagenome; Sea water
1079
1003
-
Pro
GGG
[ENA]
¢þ
>WENV182566213
OJEJ01001088
[OJEJ] seawater metagenome; Sea water
1567
1643
+
Pro
GGG
[ENA]
¢þ
>WENV182567407
OJEO01000613
[OJEO] seawater metagenome; Sea water
1191
1115
-
Pro
GGG
[ENA]
¢þ
>WENV182567984
OJEP01007351
[OJEP] seawater metagenome; Sea water
275
351
+
Pro
GGG
[ENA]
¢þ
>WENV182568271
OJET01000014
[OJET] seawater metagenome; Sea water
48366
48442
+
Pro
GGG
[ENA]
¢þ
>WENV182568709
OJEW01001029
[OJEW] seawater metagenome; Sea water
885
809
-
Pro
GGG
[ENA]
¢þ
>WENV182568923
OJEX01002886
[OJEX] seawater metagenome; Sea water
1566
1642
+
Pro
GGG
[ENA]
¢þ
>WENV182572337
OJFL01003797
[OJFL] seawater metagenome; Sea water
97
173
+
Pro
GGG
[ENA]
¢þ
>WENV182573231
OJFP01000457
[OJFP] seawater metagenome; Sea water
11262
11338
+
Pro
GGG
[ENA]
¢þ
>WENV182574813
OJFS01002192
[OJFS] seawater metagenome; Sea water
3783
3859
+
Pro
GGG
[ENA]
¢þ
>WENV182575163
OJFU01000375
[OJFU] seawater metagenome; Sea water
11261
11337
+
Pro
GGG
[ENA]
¢þ
>WENV182575497
OJFV01000005
[OJFV] seawater metagenome; Sea water
105231
105307
+
Pro
GGG
[ENA]
¢þ
>WENV182576079
OJFX01002668
[OJFX] seawater metagenome; Sea water
4599
4675
+
Pro
GGG
[ENA]
¢þ
>WENV182576961
OJGC01000008
[OJGC] seawater metagenome; Sea water
3686
3610
-
Pro
GGG
[ENA]
¢þ
>WENV182577748
OJGH01007642
[OJGH] seawater metagenome; Sea water
134
210
+
Pro
GGG
[ENA]
¢þ
>WENV182578535
OJGO01000661
[OJGO] seawater metagenome; Sea water
1254
1330
+
Pro
GGG
[ENA]
¢þ
>WENV182578820
OJGP01005218
[OJGP] seawater metagenome; Sea water
1584
1508
-
Pro
GGG
[ENA]
¢þ
>WENV182579719
OJGT01000021
[OJGT] seawater metagenome; Sea water
78243
78319
+
Pro
GGG
[ENA]
¢þ
>WENV182580044
OJGU01001925
[OJGU] seawater metagenome; Sea water
1207
1131
-
Pro
GGG
[ENA]
¢þ
>WENV182580674
OJGW01006915
[OJGW] seawater metagenome; Sea water
1925
1849
-
Pro
GGG
[ENA]
¢þ
>WENV182581604
OJGX01018792
[OJGX] seawater metagenome; Sea water
816
740
-
Pro
GGG
[ENA]
¢þ
>WENV182584467
OJHG01000421
[OJHG] seawater metagenome; Sea water
11262
11338
+
Pro
GGG
[ENA]
¢þ
>WENV182585138
OJHH01001964
[OJHH] seawater metagenome; Sea water
3147
3223
+
Pro
GGG
[ENA]
¢þ
>WENV182586406
OJHK01000248
[OJHK] seawater metagenome; Sea water
36331
36407
+
Pro
GGG
[ENA]
¢þ
>WENV182588115
OJHO01004490
[OJHO] seawater metagenome; Sea water
2186
2262
+
Pro
GGG
[ENA]
¢þ
>WENV182588811
OJHY01000105
[OJHY] seawater metagenome; Sea water
8505
8581
+
Pro
GGG
[ENA]
¢þ
>WENV182591573
OJIO01000540
[OJIO] seawater metagenome; Sea water
15396
15320
-
Pro
GGG
[ENA]
¢þ
>WENV182592561
OJIR01003819
[OJIR] seawater metagenome; Sea water
815
739
-
Pro
GGG
[ENA]
¢þ
>WENV182594132
OJIV01000574
[OJIV] seawater metagenome; Sea water
3585
3509
-
Pro
GGG
[ENA]
¢þ
>WENV183055478
OLHD01000002
[OLHD] seawater metagenome; Sea water
212488
212412
-
Pro
GGG
[ENA]
¢þ
>WENV183055704
OLHF01000129
[OLHF] seawater metagenome; Sea water
6952
6876
-
Pro
GGG
[ENA]
¢þ
>WENV183056252
OLHI01002992
[OLHI] seawater metagenome; Sea water
1889
1965
+
Pro
GGG
[ENA]
¢þ
>WENV183057672
OLHM01000374
[OLHM] seawater metagenome; Sea water
11261
11337
+
Pro
GGG
[ENA]
¢þ
>WENV183058023
OLHN01000807
[OLHN] seawater metagenome; Sea water
3590
3514
-
Pro
GGG
[ENA]
¢þ
>WENV183059832
OLHV01010831
[OLHV] seawater metagenome; Sea water
319
243
-
Pro
GGG
[ENA]
¢þ
>WENV183064765
OLII01000455
[OLII] seawater metagenome; Sea water
12308
12384
+
Pro
GGG
[ENA]
¢þ
>WENV183522202
OMOM01000810
[OMOM] seawater metagenome; Sea water
1977
1901
-
Pro
GGG
[ENA]
¢þ
>WENV183622846
OOFW01023691
[OOFW] marine metagenome; sea ice
428
504
+
Pro
GGG
[ENA]
¢þ
>WENV170304736
CESI01073742
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
473
549
+
Pro
GGG
[ENA]
¢þ
>WENV170537232
CEWQ01032848
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
936
860
-
Pro
GGG
[ENA]
¢þ
>WENV170704875
LLEN01007671
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
114
38
-
Pro
GGG
[ENA]
¢þ
>WENV170781128
MAAB01029444
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
5238
5162
-
Pro
GGG
[ENA]
¢þ
>WENV170781151
MAAB01029565
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
99506
99430
-
Pro
GGG
[ENA]
¢þ
>WENV170781211
MAAB01029683
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
862
786
-
Pro
GGG
[ENA]
¢þ
>WENV170781253
MAAB01030366
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1306
1382
+
Pro
GGG
[ENA]
¢þ
>WENV170781639
MAAB01040496
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
207278
207202
-
Pro
GGG
[ENA]
¢þ
>WENV170782487
MAAC01010158
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2408
2484
+
Pro
GGG
[ENA]
¢þ
>WENV170782514
MAAC01010172
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
88308
88232
-
Pro
GGG
[ENA]
¢þ
>WENV170782893
MAAC01011849
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
26812
26736
-
Pro
GGG
[ENA]
¢þ
>WENV170782932
MAAC01012092
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
14670
14594
-
Pro
GGG
[ENA]
¢þ
>WENV170783132
MAAC01014032
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1926
2002
+
Pro
GGG
[ENA]
¢þ
>WENV170783976
MAAC01020226
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
12739
12663
-
Pro
GGG
[ENA]
¢þ
>WENV170821608
MDSY01024915
[MDSY] marine metagenome; seawater
2824
2900
+
Pro
GGG
[ENA]
¢þ
>C181169965
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
2041184
2041108
-
Pro
GGG
-
¡û
>C191128381
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
2242714
2242638
-
Pro
GGG
-
¡û
>W1911770199
QXIO01000002
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
181737
181813
+
Pro
GGG
[ENA]
¡û
>W1810155113
PJAI01000089
Gammaproteobacteria
Colwellia echini A3T [PJAI]
49759
49835
+
Pro
GGG
[ENA]
¡û
>W1810735890
QOLD01000053
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
51165
51241
+
Pro
GGG
[ENA]
¡û
>W1511322880
JQEC01000021
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
137911
137835
-
Pro
GGG
[ENA]
¡û
>W1511322951
JQED01000008
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
91949
91873
-
Pro
GGG
[ENA]
¡û
>C161052248
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
2090235
2090311
+
Pro
GGG
[Ensembl]
¡û
>W1610663869
LJVG01000036
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
20791
20867
+
Pro
GGG
[ENA]
¡û
>W1610667823
LJYX01000013
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
27952
28028
+
Pro
GGG
[ENA]
¡û
>W1610917287
LSMS01000147
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
12027
12103
+
Pro
GGG
[ENA]
¡û
>W1710087350
BDQM01000014
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
78887
78811
-
Pro
GGG
[ENA]
¡û
>W1710545254
FOBI01000006
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
94468
94392
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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