This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146745 (8 seq.)
>WENV180098711
MTBK01263062
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
149
226
+
Pro
TGG
[ENA]
¡û
>WENV170677273
LDZT01004640
[LDZT] terrestrial metagenome; oil reservoir sample SB1
81
4
-
Pro
TGG
[ENA]
¡û
>WENV170678147
LDZT01011525
[LDZT] terrestrial metagenome; oil reservoir sample SB1
561
484
-
Pro
TGG
[ENA]
¡û
>WENV170678423
LDZU01000236
[LDZU] terrestrial metagenome; oil reservoir sample SB2
8860
8937
+
Pro
TGG
[ENA]
¡û
>WENV170678521
LDZU01001455
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2504
2581
+
Pro
TGG
[ENA]
¡û
>WENV170727085
LSQX01404167
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
19051
19128
+
Pro
TGG
[ENA]
¡û
>W1610613601
LGGA01000073
Atribacterota
Atribacteria bacterium 34_128 [LGGA]
81
4
-
Pro
TGG
[ENA]
¡û
>W1710734773
LGGA01000073
Atribacterota
Atribacteria bacterium 34_128 [LGGA]
81
4
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK