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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146747 (22 seq.)
>W141079234
ATLJ01000022
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
5365
5291
-
Met
CAT
[ENA]
¡û
>W141276342
JADS01000004
Bacteroidota
Olleya sp. VCSA23 [JADS]
40154
40078
-
Met
CAT
[ENA]
¡û
>WENV183705620
PDWI01001983
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5885
5811
-
Met
CAT
[ENA]
¢þ
>WENV183706263
PDWI01003617
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15460
15386
-
Met
CAT
[ENA]
¢þ
>WENV183718189
PDWJ01002731
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6270
6344
+
Met
CAT
[ENA]
¢þ
>WENV170991901
MWWA01369698
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
238
164
-
Met
CAT
[ENA]
¢þ
>W141807621
JPOO01000003
Bacteroidota
Arenibacter algicola [JPOO]
124260
124184
-
Met
CAT
[ENA]
¡û
>W1511590416
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
599920
599844
-
Met
CAT
[ENA]
¡û
>W1511590417
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
599787
599711
-
Met
CAT
[ENA]
¡û
>W1511590418
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
599671
599595
-
Met
CAT
[ENA]
¡û
>W1511590419
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
599548
599472
-
Met
CAT
[ENA]
¡û
>W1511590420
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
599426
599350
-
Met
CAT
[ENA]
¡û
>W1511590421
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
599292
599216
-
Met
CAT
[ENA]
¡û
>W11176837
AFXZ01000016
Bacteroidota
Bizionia argentinensis JUB59 [AFXZ]
5052
4976
-
Met
CAT
[ENA]
¡û
>C161046341
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1799923
1799847
-
Met
CAT
-
¡û
>C161046342
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1799790
1799714
-
Met
CAT
-
¡û
>C161046343
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1799674
1799598
-
Met
CAT
-
¡û
>C161046344
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1799551
1799475
-
Met
CAT
-
¡û
>C161046345
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1799429
1799353
-
Met
CAT
-
¡û
>C161046346
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1799295
1799219
-
Met
CAT
-
¡û
>W1610060559
BCBW01000001
Bacteroidota
Olleya sp. ITB9 [BCBW]
39711
39635
-
Met
CAT
[ENA]
¡û
>W1710057814
BCBW01000001
Bacteroidota
Olleya sp. ITB9 [BCBW]
39711
39635
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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