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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146753 (69 seq.)
>W1711054775
LRUB01000032
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
3761
3685
-
Ile
GAT
[ENA]
¡û
>W1711054777
LRUB01000034
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
38864
38788
-
Ile
GAT
[ENA]
¡û
>W1711054785
LRUB01000036
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
354362
354438
+
Ile
GAT
[ENA]
¡û
>W131181090
ARNQ01000008
Alphaproteobacteria
Pannonibacter phragmitetus DSM 14782 [ARNQ]
1955
2031
+
Ile
GAT
[ENA]
¡û
>w020467
AAUW01000037
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
15928
16006
+
Ile
GAT
[ENA]
¡û
>w020456
AAUW01000023
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
1793
1871
+
Ile
GAT
[ENA]
¡û
>w020449
AAUW01000014
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
113020
113098
+
Ile
GAT
[ENA]
¡û
>w020417
AAUW01000002
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
402163
402085
-
Ile
GAT
[ENA]
¡û
>WENV180319671
OBKN01005486
[OBKN] human gut metagenome; human gut
756
832
+
Ile
GAT
[ENA]
¢þ
>WENV180526558
OCHI01030793
[OCHI] human gut metagenome; human gut
529
453
-
Ile
GAT
[ENA]
¢þ
>WENV180784121
ODIQ01156520
[ODIQ] human metagenome; G_DNA_Tongue dorsum
92
168
+
Ile
GAT
[ENA]
¢þ
>WENV180820477
ODJR01008807
[ODJR] human metagenome; G_DNA_Tongue dorsum
2304
2228
-
Ile
GAT
[ENA]
¢þ
>WENV180830733
ODKB01010714
[ODKB] human metagenome; G_DNA_Tongue dorsum
2270
2194
-
Ile
GAT
[ENA]
¢þ
>WENV180897037
ODNI01005461
[ODNI] human metagenome; G_DNA_Tongue dorsum
2608
2532
-
Ile
GAT
[ENA]
¢þ
>WENV181075010
OEAO01053401
[OEAO] human metagenome; G_DNA_Tongue dorsum
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV181112066
OEEL01000123
[OEEL] human metagenome; G_DNA_Tongue dorsum
801
877
+
Ile
GAT
[ENA]
¢þ
>WENV181113157
OEEL01013125
[OEEL] human metagenome; G_DNA_Tongue dorsum
93
169
+
Ile
GAT
[ENA]
¢þ
>WENV181485955
OGFM01040812
[OGFM] metagenome; Human gut stool
59
135
+
Ile
GAT
[ENA]
¢þ
>W141152936
AXCE01000019
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
4147
4071
-
Ile
GAT
[ENA]
¡û
>WENV181739157
OGQI01065644
[OGQI] human gut metagenome; faeces
117
193
+
Ile
GAT
[ENA]
¢þ
>WENV182044463
OHDR01030813
[OHDR] human gut metagenome; feces
753
677
-
Ile
GAT
[ENA]
¢þ
>WENV182075747
OHFR01013477
[OHFR] human gut metagenome; feces
289
365
+
Ile
GAT
[ENA]
¢þ
>WENV182139021
OHKO01007327
[OHKO] human gut metagenome; feces
2159
2083
-
Ile
GAT
[ENA]
¢þ
>WENV182251852
OHSW01030138
[OHSW] human gut metagenome; feces
528
452
-
Ile
GAT
[ENA]
¢þ
>WENV182257532
OHTF01036155
[OHTF] human gut metagenome; feces
372
448
+
Ile
GAT
[ENA]
¢þ
>WENV182343629
OIAK01021559
[OIAK] human gut metagenome; feces
308
384
+
Ile
GAT
[ENA]
¢þ
>WENV182911051
OKTJ01042169
[OKTJ] human gut metagenome; feces
665
589
-
Ile
GAT
[ENA]
¢þ
>WENV183604720
OODL01037414
[OODL] human gut metagenome; human gut
118
194
+
Ile
GAT
[ENA]
¢þ
>ENV08002513
ABPW01003045
microbial mat metagenome; Guerrero Negro Hypersaline Mat 08; altitude 310m AMSL; sample depth 1m below water level, 10-22mm depth into the mat
673
749
+
Ile
GAT
[ENA]
¡û
>WENV170596008
FUFK012070693
[FUFK] metagenome; unknown
164
240
+
Ile
GAT
[ENA]
¢þ
>WENV170635586
JDSG01000241
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
2411
2487
+
Ile
GAT
[ENA]
¢þ
>WENV170760957
LUMU01002235
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
1641
1565
-
Ile
GAT
[ENA]
¢þ
>WENV170962401
MRWF01014803
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
366
442
+
Ile
GAT
[ENA]
¢þ
>WENV170962404
MRWF01014803
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
95672
95748
+
Ile
GAT
[ENA]
¢þ
>WENV170962534
MRWF01019435
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
26706
26782
+
Ile
GAT
[ENA]
¢þ
>WENV170964357
MRWG01009009
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2534
2458
-
Ile
GAT
[ENA]
¢þ
>WENV170964398
MRWG01009955
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1746
1670
-
Ile
GAT
[ENA]
¢þ
>C191087684
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
4857792
4857716
-
Ile
GAT
-
¡û
>C191087690
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
4596242
4596166
-
Ile
GAT
-
¡û
>C191087695
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
4197795
4197719
-
Ile
GAT
-
¡û
>W09118260
ACCU01000015
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
1263112
1263188
+
Ile
GAT
[ENA]
¡û
>W09118263
ACCU01000015
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
1344745
1344821
+
Ile
GAT
[ENA]
¡û
>W09118273
ACCU01000015
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
643918
643842
-
Ile
GAT
[ENA]
¡û
>W1910501458
FYAN01000001
Alphaproteobacteria
Pannonibacter sp. I15F10I1 [FYAN]
473
397
-
Ile
GAT
[ENA]
¡û
>W1910501476
FYAN01000012
Alphaproteobacteria
Pannonibacter sp. I15F10I1 [FYAN]
605
529
-
Ile
GAT
[ENA]
¡û
>W1910501527
FYAO01000024
Alphaproteobacteria
Pannonibacter sp. P2PFMT1 [FYAO]
1939
2015
+
Ile
GAT
[ENA]
¡û
>W1910501578
FYAP01000025
Alphaproteobacteria
Pannonibacter sp. CS1GBFMT1 [FYAP]
1939
2015
+
Ile
GAT
[ENA]
¡û
>W1910501616
FYAQ01000018
Alphaproteobacteria
Pannonibacter sp. TSB10GB1 [FYAQ]
4122
4046
-
Ile
GAT
[ENA]
¡û
>W1911767369
QXER01000015
Alphaproteobacteria
Pannonibacter phragmitetus 954 [QXER]
3939
3863
-
Ile
GAT
[ENA]
¡û
>W1911767411
QXES01000004
Alphaproteobacteria
Pannonibacter phragmitetus H1-4 [QXES]
1379329
1379253
-
Ile
GAT
[ENA]
¡û
>W1911767417
QXES01000004
Alphaproteobacteria
Pannonibacter phragmitetus H1-4 [QXES]
981789
981713
-
Ile
GAT
[ENA]
¡û
>W1911767422
QXES01000004
Alphaproteobacteria
Pannonibacter phragmitetus H1-4 [QXES]
582145
582069
-
Ile
GAT
[ENA]
¡û
>W1810232562
PPCN01000024
Alphaproteobacteria
Roseibium marinum DSM 17023 [PPCN]
1950
2026
+
Ile
GAT
[ENA]
¡û
>W1810324359
PUDR01000029
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
3561
3485
-
Ile
GAT
[ENA]
¡û
>W1510741260
CYHE01000031
Alphaproteobacteria
Pannonibacter indicus DSM 23407 [CYHE]
4088
4012
-
Ile
GAT
[ENA]
¡û
>W1511705847
LGSQ01000004
Alphaproteobacteria
Pannonibacter phragmitetus CGMCC9175 [LGSQ]
2038
2114
+
Ile
GAT
[ENA]
¡û
>C161050759
CP013068
Alphaproteobacteria
Pannonibacter phragmitetus 31801 [CP013068]
1532219
1532295
+
Ile
GAT
[Ensembl]
¡û
>C161050765
CP013068
Alphaproteobacteria
Pannonibacter phragmitetus 31801 [CP013068]
1801154
1801230
+
Ile
GAT
[Ensembl]
¡û
>C161050770
CP013068
Alphaproteobacteria
Pannonibacter phragmitetus 31801 [CP013068]
2200844
2200920
+
Ile
GAT
[Ensembl]
¡û
>W1610092017
CXST01000015
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
4054
3978
-
Ile
GAT
[ENA]
¡û
>W1610092284
CXWE01000020
Alphaproteobacteria
Roseibium album alba [CXWE]
2081
2157
+
Ile
GAT
[ENA]
¡û
>W1610632355
LIPT01000031
Alphaproteobacteria
Pannonibacter indicus [LIPT]
4088
4012
-
Ile
GAT
[ENA]
¡û
>W1610895821
LRUB01000032
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
3761
3685
-
Ile
GAT
[ENA]
¡û
>W1610895823
LRUB01000034
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
38864
38788
-
Ile
GAT
[ENA]
¡û
>W1610895831
LRUB01000036
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
354362
354438
+
Ile
GAT
[ENA]
¡û
>W1710095374
CXST01000015
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
4054
3978
-
Ile
GAT
[ENA]
¡û
>W1710095641
CXWE01000020
Alphaproteobacteria
Roseibium album alba [CXWE]
2081
2157
+
Ile
GAT
[ENA]
¡û
>W1710571173
FOVR01000034
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
1985
2061
+
Ile
GAT
[ENA]
¡û
>W1710766741
LIPT01000031
Alphaproteobacteria
Pannonibacter indicus [LIPT]
4088
4012
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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