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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146757 (6 seq.)
>WENV183516221
OMKS01145385
[OMKS] sediment metagenome; hot spring sediment
289
214
-
Pro
CGG
[ENA]
¡û
>W1920001007
PGCL01000001
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
292524
292450
-
Pro
CGG
[ENA]
¡û
>W1911675914
QGMY01000006
Euryarchaeota
Methanospirillum lacunae Ki8-1 [QGMY]
221168
221094
-
Pro
CGG
[ENA]
¡û
>W2011250838
QGMY01000006
Euryarchaeota
Methanospirillum lacunae Ki8-1 [QGMY]
221168
221094
-
Pro
CGG
[ENA]
¡û
>W1610003474
AGCO01000001
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
239341
239266
-
Pseudo
CGG
[ENA]
¡û
>W1610062998
BCNW01000001
Euryarchaeota
Methanofollis ethanolicus HASU [BCNW]
151219
151145
-
Pseudo
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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