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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146768 (9 seq.)
>C183003486
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
4934341
4934266
-
Val
GAC
-
¡û
>C193002864
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
3117427
3117502
+
Val
GAC
-
¡û
>C193003099
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
3184353
3184428
+
Val
GAC
-
¡û
>W143017017
JNFF01000110
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
142501
142426
-
Val
GAC
[ENA]
¡û
>W2130001180
BMIU01000014
Bacteroidota
Echinicola rosea CGMCC 1.15407 [BMIU]
113182
113107
-
Val
GAC
[ENA]
¡û
>W2130009927
JAAAFW010000006
Bacteroidota
Pedobacter cryoconitis Xaverov 94 [JAAAFW]
501993
502068
+
Val
GAC
[ENA]
¡û
>W1730008707
FNGZ01000002
Bacteroidota
Pedobacter antarcticus [FNGZ]
96335
96410
+
Val
GAC
[ENA]
¡û
>W1730009355
FOBR01000006
Unclassified
bacterium A37T11 [FOBR]
80036
79961
-
Val
GAC
[ENA]
¡û
>W1730009763
FONS01000003
Bacteroidota
Pedobacter antarcticus [FONS]
211362
211287
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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