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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146770 (135 seq.)
>WENV180123148
OASV01030459
[OASV] human gut metagenome; faeces
154
230
+
Glu
TTC
[ENA]
¢þ
>WENV180126452
OASZ01007866
[OASZ] human gut metagenome; faeces
853
777
-
Glu
TTC
[ENA]
¢þ
>WENV180140330
OATT01059799
[OATT] human gut metagenome; faeces
1
77
+
Glu
TTC
[ENA]
¢þ
>WENV180141577
OATU01028550
[OATU] human gut metagenome; faeces
516
440
-
Glu
TTC
[ENA]
¢þ
>WENV180243790
OBDJ01107793
[OBDJ] human gut metagenome; human gut
89
165
+
Glu
TTC
[ENA]
¢þ
>WENV180290527
OBIU01033874
[OBIU] human gut metagenome; human gut
554
478
-
Glu
TTC
[ENA]
¢þ
>WENV180316344
OBKI01015835
[OBKI] human gut metagenome; human gut
154
230
+
Glu
TTC
[ENA]
¢þ
>WENV180331285
OBKW01171822
[OBKW] human gut metagenome; human gut
119
195
+
Glu
TTC
[ENA]
¢þ
>WENV180462820
OBYB01081405
[OBYB] human gut metagenome; faeces
212
136
-
Glu
TTC
[ENA]
¢þ
>WENV180495243
OCAA01020109
[OCAA] human gut metagenome; faeces
692
616
-
Glu
TTC
[ENA]
¢þ
>WENV180538887
OCHO01045343
[OCHO] human gut metagenome; human gut
232
156
-
Glu
TTC
[ENA]
¢þ
>WENV180647184
OCSH01042952
[OCSH] human gut metagenome; human gut
762
686
-
Glu
TTC
[ENA]
¢þ
>WENV180743315
ODHH01239396
[ODHH] human metagenome; G_DNA_Stool
136
60
-
Glu
TTC
[ENA]
¢þ
>WENV180867799
ODLK01016230
[ODLK] human metagenome; G_DNA_Stool
796
872
+
Glu
TTC
[ENA]
¢þ
>WENV180994620
ODVQ01181126
[ODVQ] human metagenome; G_DNA_Stool
137
213
+
Glu
TTC
[ENA]
¢þ
>WENV181155064
OEIC01150088
[OEIC] human metagenome; G_DNA_Stool
192
116
-
Glu
TTC
[ENA]
¢þ
>WENV181280088
OFGN01031677
[OFGN] mouse gut metagenome; faeces
794
718
-
Glu
TTC
[ENA]
¢þ
>WENV181289124
OFGZ01009199
[OFGZ] mouse gut metagenome; faeces
1037
961
-
Glu
TTC
[ENA]
¢þ
>WENV181426922
OGCQ01019266
[OGCQ] human gut metagenome; human gut
154
230
+
Glu
TTC
[ENA]
¢þ
>WENV181470800
OGEU01018891
[OGEU] metagenome; Human gut stool
1597
1521
-
Glu
TTC
[ENA]
¢þ
>WENV181478101
OGFF01014103
[OGFF] metagenome; Human gut stool
75
151
+
Glu
TTC
[ENA]
¢þ
>WENV181551480
OGIN01021288
[OGIN] metagenome; Human gut stool
1
77
+
Glu
TTC
[ENA]
¢þ
>WENV181563380
OGJG01028212
[OGJG] metagenome; Human gut stool
281
205
-
Glu
TTC
[ENA]
¢þ
>WENV181623167
OGMH01005003
[OGMH] metagenome; Human gut stool
1497
1421
-
Glu
TTC
[ENA]
¢þ
>WENV181642925
OGNH01000898
[OGNH] metagenome; Human gut stool
3541
3617
+
Glu
TTC
[ENA]
¢þ
>WENV181727237
OGPZ01047634
[OGPZ] human gut metagenome; faeces
346
422
+
Glu
TTC
[ENA]
¢þ
>WENV181732527
OGQD01047489
[OGQD] human gut metagenome; faeces
621
545
-
Glu
TTC
[ENA]
¢þ
>WENV181763636
OGQX01010012
[OGQX] human gut metagenome; faeces
4002
4078
+
Glu
TTC
[ENA]
¢þ
>WENV181778065
OGRH01013427
[OGRH] human gut metagenome; faeces
225
149
-
Glu
TTC
[ENA]
¢þ
>WENV181789927
OGRO01061151
[OGRO] human gut metagenome; faeces
894
818
-
Glu
TTC
[ENA]
¢þ
>WENV181821112
OGUD01029782
[OGUD] metagenome; Human gut stool
409
333
-
Glu
TTC
[ENA]
¢þ
>WENV181829354
OGUN01014706
[OGUN] human gut metagenome; faeces
156
232
+
Glu
TTC
[ENA]
¢þ
>WENV181869321
OGWX01026071
[OGWX] human gut metagenome; faeces
1060
984
-
Glu
TTC
[ENA]
¢þ
>WENV181881093
OGXG01033073
[OGXG] human gut metagenome; faeces
182
106
-
Glu
TTC
[ENA]
¢þ
>WENV181921177
OGYJ01009851
[OGYJ] human gut metagenome; faeces
3492
3416
-
Glu
TTC
[ENA]
¢þ
>WENV181981208
OHAG01000985
[OHAG] human gut metagenome; faeces
18549
18625
+
Glu
TTC
[ENA]
¢þ
>WENV181981215
OHAG01000985
[OHAG] human gut metagenome; faeces
20516
20592
+
Glu
TTC
[ENA]
¢þ
>WENV182423995
OIHC01010708
[OIHC] human gut metagenome; human gut
61
137
+
Glu
TTC
[ENA]
¢þ
>WENV182498366
OITN01012251
[OITN] human gut metagenome; human gut
140
216
+
Glu
TTC
[ENA]
¢þ
>WENV182509589
OIWI01003699
[OIWI] human gut metagenome; faeces
597
521
-
Glu
TTC
[ENA]
¢þ
>WENV182876270
OKRX01037665
[OKRX] human gut metagenome; faeces
902
826
-
Glu
TTC
[ENA]
¢þ
>WENV182879785
OKRZ01030701
[OKRZ] human gut metagenome; faeces
599
675
+
Glu
TTC
[ENA]
¢þ
>WENV182964963
OKWR01016461
[OKWR] human gut metagenome; human gut
1358
1282
-
Glu
TTC
[ENA]
¢þ
>WENV183074404
OLIU01046875
[OLIU] human gut metagenome; stool sample
88
164
+
Glu
TTC
[ENA]
¢þ
>WENV183103800
OLNJ01007944
[OLNJ] human gut metagenome; faeces
153
229
+
Glu
TTC
[ENA]
¢þ
>WENV183113882
OLNP01051467
[OLNP] human gut metagenome; faeces
585
661
+
Glu
TTC
[ENA]
¢þ
>WENV183131299
OLOA01026877
[OLOA] human gut metagenome; faeces
504
428
-
Glu
TTC
[ENA]
¢þ
>WENV183133040
OLOB01019541
[OLOB] human gut metagenome; faeces
1075
1151
+
Glu
TTC
[ENA]
¢þ
>WENV183138453
OLOH01004482
[OLOH] human gut metagenome; faeces
375
299
-
Glu
TTC
[ENA]
¢þ
>WENV183145127
OLOL01037439
[OLOL] human gut metagenome; faeces
89
165
+
Glu
TTC
[ENA]
¢þ
>WENV183153180
OLOQ01050906
[OLOQ] human gut metagenome; faeces
128
52
-
Glu
TTC
[ENA]
¢þ
>WENV183166085
OLOX01038147
[OLOX] human gut metagenome; faeces
825
749
-
Glu
TTC
[ENA]
¢þ
>WENV183184172
OLPL01030120
[OLPL] human gut metagenome; faeces
364
440
+
Glu
TTC
[ENA]
¢þ
>WENV183187780
OLPO01075595
[OLPO] human gut metagenome; faeces
362
286
-
Glu
TTC
[ENA]
¢þ
>WENV183197208
OLPU01019478
[OLPU] human gut metagenome; faeces
1226
1150
-
Glu
TTC
[ENA]
¢þ
>WENV183210874
OLQC01008469
[OLQC] human gut metagenome; faeces
2905
2829
-
Glu
TTC
[ENA]
¢þ
>WENV183215803
OLQG01018928
[OLQG] human gut metagenome; faeces
1080
1004
-
Glu
TTC
[ENA]
¢þ
>WENV183228087
OLQQ01028175
[OLQQ] human gut metagenome; faeces
458
382
-
Glu
TTC
[ENA]
¢þ
>WENV183234124
OLQV01012339
[OLQV] human gut metagenome; faeces
952
876
-
Glu
TTC
[ENA]
¢þ
>WENV183237682
OLQY01001092
[OLQY] human gut metagenome; faeces
10239
10315
+
Glu
TTC
[ENA]
¢þ
>WENV183253423
OLRI01082153
[OLRI] human gut metagenome; faeces
393
469
+
Glu
TTC
[ENA]
¢þ
>WENV183281907
OLSC01000392
[OLSC] human gut metagenome; faeces
48817
48741
-
Glu
TTC
[ENA]
¢þ
>WENV183313421
OLVP01047739
[OLVP] human gut metagenome; faeces
505
429
-
Glu
TTC
[ENA]
¢þ
>WENV183324717
OLVY01044022
[OLVY] human gut metagenome; feces
786
710
-
Glu
TTC
[ENA]
¢þ
>WENV183395289
OLZH01005490
[OLZH] human gut metagenome; feces
2485
2561
+
Glu
TTC
[ENA]
¢þ
>WENV183470288
OMEJ01013679
[OMEJ] human gut metagenome; feces
480
404
-
Glu
TTC
[ENA]
¢þ
>WENV183471650
OMEP01006657
[OMEP] human gut metagenome; feces
186
110
-
Glu
TTC
[ENA]
¢þ
>WENV183540928
OOAK01001006
[OOAK] human gut metagenome; human gut
214
138
-
Glu
TTC
[ENA]
¢þ
>WENV183549693
OOAZ01007943
[OOAZ] human gut metagenome; human gut
2827
2751
-
Glu
TTC
[ENA]
¢þ
>WENV183584649
OOCQ01073230
[OOCQ] human gut metagenome; human gut
545
469
-
Glu
TTC
[ENA]
¢þ
>WENV183589626
OOCW01002148
[OOCW] human gut metagenome; human gut
301
225
-
Glu
TTC
[ENA]
¢þ
>WENV170020781
BBPE01027580
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
123
199
+
Glu
TTC
[ENA]
¢þ
>WENV170690666
LFRM01355320
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4
80
+
Glu
TTC
[ENA]
¢þ
>W10115693
ADMN01000021
Bacillota
Turicibacter sanguinis PC909 [ADMN]
16218
16294
+
Glu
TTC
[ENA]
¡û
>W10115705
ADMN01000044
Bacillota
Turicibacter sanguinis PC909 [ADMN]
5479
5555
+
Glu
TTC
[ENA]
¡û
>W10115721
ADMN01000089
Bacillota
Turicibacter sanguinis PC909 [ADMN]
1194
1270
+
Glu
TTC
[ENA]
¡û
>W10115729
ADMN01000099
Bacillota
Turicibacter sanguinis PC909 [ADMN]
364
288
-
Glu
TTC
[ENA]
¡û
>W1511403407
JTLC01000019
Bacillota
Firmicutes bacterium ZOR0006 [JTLC]
20993
21069
+
Glu
TTC
[ENA]
¡û
>W1511403424
JTLC01000085
Bacillota
Firmicutes bacterium ZOR0006 [JTLC]
86
10
-
Glu
TTC
[ENA]
¡û
>W1511403429
JTLC01000091
Bacillota
Firmicutes bacterium ZOR0006 [JTLC]
25946
25870
-
Glu
TTC
[ENA]
¡û
>W11120190
ADMN01000021
Bacillota
Turicibacter sanguinis PC909 [ADMN]
16218
16294
+
Glu
TTC
[ENA]
¡û
>W11120202
ADMN01000044
Bacillota
Turicibacter sanguinis PC909 [ADMN]
5479
5555
+
Glu
TTC
[ENA]
¡û
>W11120218
ADMN01000089
Bacillota
Turicibacter sanguinis PC909 [ADMN]
1194
1270
+
Glu
TTC
[ENA]
¡û
>W11120226
ADMN01000099
Bacillota
Turicibacter sanguinis PC909 [ADMN]
364
288
-
Glu
TTC
[ENA]
¡û
>W11151953
AEXQ01000005
Bacillota
Turicibacter sp. HGF1 [AEXQ]
6243
6167
-
Glu
TTC
[ENA]
¡û
>W11151962
AEXQ01000039
Bacillota
Turicibacter sp. HGF1 [AEXQ]
314
390
+
Glu
TTC
[ENA]
¡û
>W11151968
AEXQ01000085
Bacillota
Turicibacter sp. HGF1 [AEXQ]
83
7
-
Glu
TTC
[ENA]
¡û
>W11151981
AEXQ01000115
Bacillota
Turicibacter sp. HGF1 [AEXQ]
600
524
-
Glu
TTC
[ENA]
¡û
>C161056043
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1533936
1534012
+
Glu
TTC
[Ensembl]
¡û
>C161056050
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1535913
1535989
+
Glu
TTC
[Ensembl]
¡û
>C161056054
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1817725
1817801
+
Glu
TTC
[Ensembl]
¡û
>C161056081
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
953340
953264
-
Glu
TTC
[Ensembl]
¡û
>C161056113
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
487207
487131
-
Glu
TTC
[Ensembl]
¡û
>C161056129
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
485723
485647
-
Glu
TTC
[Ensembl]
¡û
>C161056135
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
484114
484038
-
Glu
TTC
[Ensembl]
¡û
>C161056157
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
481865
481789
-
Glu
TTC
[Ensembl]
¡û
>C161056163
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
474865
474789
-
Glu
TTC
[Ensembl]
¡û
>W1610098505
CYXW01000001
Bacillota
Turicibacter sanguinis [CYXW]
6
82
+
Glu
TTC
[ENA]
¡û
>W1610098509
CYXW01000001
Bacillota
Turicibacter sanguinis [CYXW]
6262
6338
+
Glu
TTC
[ENA]
¡û
>W1610098538
CYXW01000013
Bacillota
Turicibacter sanguinis [CYXW]
276
200
-
Glu
TTC
[ENA]
¡û
>W1610098542
CYXW01000014
Bacillota
Turicibacter sanguinis [CYXW]
5090
5014
-
Glu
TTC
[ENA]
¡û
>W1610098548
CYXW01000014
Bacillota
Turicibacter sanguinis [CYXW]
192
116
-
Glu
TTC
[ENA]
¡û
>W1610098558
CYXW01000032
Bacillota
Turicibacter sanguinis [CYXW]
534
458
-
Glu
TTC
[ENA]
¡û
>W1610099796
CYYS01000008
Bacillota
Turicibacter sanguinis [CYYS]
81
5
-
Glu
TTC
[ENA]
¡û
>W1610099798
CYYS01000013
Bacillota
Turicibacter sanguinis [CYYS]
58982
59058
+
Glu
TTC
[ENA]
¡û
>W1610099805
CYYS01000013
Bacillota
Turicibacter sanguinis [CYYS]
60961
61037
+
Glu
TTC
[ENA]
¡û
>W1610099809
CYYS01000040
Bacillota
Turicibacter sanguinis [CYYS]
6668
6744
+
Glu
TTC
[ENA]
¡û
>W1610099832
CYYS01000076
Bacillota
Turicibacter sanguinis [CYYS]
597
521
-
Glu
TTC
[ENA]
¡û
>W1610099852
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1544
1620
+
Glu
TTC
[ENA]
¡û
>W1610099857
CYYS01000083
Bacillota
Turicibacter sanguinis [CYYS]
1157
1233
+
Glu
TTC
[ENA]
¡û
>W1610101324
CYZQ01000024
Bacillota
Turicibacter sanguinis [CYZQ]
31304
31380
+
Glu
TTC
[ENA]
¡û
>W1610101332
CYZQ01000049
Bacillota
Turicibacter sanguinis [CYZQ]
364
440
+
Glu
TTC
[ENA]
¡û
>W1610101338
CYZQ01000050
Bacillota
Turicibacter sanguinis [CYZQ]
1313
1389
+
Glu
TTC
[ENA]
¡û
>W1610101343
CYZQ01000051
Bacillota
Turicibacter sanguinis [CYZQ]
1205
1281
+
Glu
TTC
[ENA]
¡û
>W1610104185
CZBN01000054
Bacillota
Turicibacter sanguinis [CZBN]
79
3
-
Glu
TTC
[ENA]
¡û
>W1610104189
CZBN01000082
Bacillota
Turicibacter sanguinis [CZBN]
5090
5166
+
Glu
TTC
[ENA]
¡û
>W1710101260
CYXW01000001
Bacillota
Turicibacter sanguinis [CYXW]
6
82
+
Glu
TTC
[ENA]
¡û
>W1710101264
CYXW01000001
Bacillota
Turicibacter sanguinis [CYXW]
6262
6338
+
Glu
TTC
[ENA]
¡û
>W1710101293
CYXW01000013
Bacillota
Turicibacter sanguinis [CYXW]
276
200
-
Glu
TTC
[ENA]
¡û
>W1710101297
CYXW01000014
Bacillota
Turicibacter sanguinis [CYXW]
5090
5014
-
Glu
TTC
[ENA]
¡û
>W1710101303
CYXW01000014
Bacillota
Turicibacter sanguinis [CYXW]
192
116
-
Glu
TTC
[ENA]
¡û
>W1710101313
CYXW01000032
Bacillota
Turicibacter sanguinis [CYXW]
534
458
-
Glu
TTC
[ENA]
¡û
>W1710102551
CYYS01000008
Bacillota
Turicibacter sanguinis [CYYS]
81
5
-
Glu
TTC
[ENA]
¡û
>W1710102553
CYYS01000013
Bacillota
Turicibacter sanguinis [CYYS]
58982
59058
+
Glu
TTC
[ENA]
¡û
>W1710102560
CYYS01000013
Bacillota
Turicibacter sanguinis [CYYS]
60961
61037
+
Glu
TTC
[ENA]
¡û
>W1710102564
CYYS01000040
Bacillota
Turicibacter sanguinis [CYYS]
6668
6744
+
Glu
TTC
[ENA]
¡û
>W1710102587
CYYS01000076
Bacillota
Turicibacter sanguinis [CYYS]
597
521
-
Glu
TTC
[ENA]
¡û
>W1710102607
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1544
1620
+
Glu
TTC
[ENA]
¡û
>W1710102612
CYYS01000083
Bacillota
Turicibacter sanguinis [CYYS]
1157
1233
+
Glu
TTC
[ENA]
¡û
>W1710104079
CYZQ01000024
Bacillota
Turicibacter sanguinis [CYZQ]
31304
31380
+
Glu
TTC
[ENA]
¡û
>W1710104087
CYZQ01000049
Bacillota
Turicibacter sanguinis [CYZQ]
364
440
+
Glu
TTC
[ENA]
¡û
>W1710104093
CYZQ01000050
Bacillota
Turicibacter sanguinis [CYZQ]
1313
1389
+
Glu
TTC
[ENA]
¡û
>W1710104098
CYZQ01000051
Bacillota
Turicibacter sanguinis [CYZQ]
1205
1281
+
Glu
TTC
[ENA]
¡û
>W1710106889
CZBN01000054
Bacillota
Turicibacter sanguinis [CZBN]
79
3
-
Glu
TTC
[ENA]
¡û
>W1710106893
CZBN01000082
Bacillota
Turicibacter sanguinis [CZBN]
5090
5166
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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