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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146780 (35 seq.)
>C171000428
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
1018964
1019040
+
Pro
GGG
-
¡û
>C171000740
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
1004816
1004892
+
Pro
GGG
-
¡û
>C171001375
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
891451
891527
+
Pro
GGG
-
¡û
>C025690
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
891345
891421
+
Pro
GGG
[Ensembl]
¡û
>WENV180014181
FPIC01082044
[FPIC] soil metagenome; Soil
77
1
-
Pro
GGG
[ENA]
¢þ
>WENV180014500
FQKF010028151
[FQKF] soil metagenome; Soil
73
-1
-
Pro
GGG
[ENA]
¢þ
>WENV180098155
MTBK01231213
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
237
313
+
Pro
GGG
[ENA]
¢þ
>W141020294
AJIP01000016
Thermotogota
Thermosipho africanus H17ap60334 [AJIP]
28947
28871
-
Pro
GGG
[ENA]
¡û
>WENV181226127
OFDK01000072
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
15140
15064
-
Pro
GGG
[ENA]
¢þ
>WENV181285307
OFGS01000001
[OFGS] hot springs metagenome; Water and soil
136251
136175
-
Pro
GGG
[ENA]
¢þ
>C08004989
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1887080
1887007
-
Pro
GGG
[Ensembl]
¡û
>W09106585
AAWH01000006
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
69717
69641
-
Pro
GGG
[ENA]
¡û
>W1910129006
BHXD01000007
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
60848
60924
+
Pro
GGG
[ENA]
¡û
>W1910573558
JPMG01000029
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
2618
2542
-
Pro
GGG
[ENA]
¡û
>W1910573595
JPMH01000110
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
4164
4240
+
Pro
GGG
[ENA]
¡û
>C09110478
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
1071598
1071522
-
Pro
GGG
[Ensembl]
¡û
>W1910990298
NKRG01000008
Thermotogota
Thermosipho africanus Ob7 [NKRG]
36024
35948
-
Pro
GGG
[ENA]
¡û
>W1511355424
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1153657
1153733
+
Pro
GGG
[ENA]
¡û
>C121009900
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
2107486
2107410
-
Pro
GGG
[Ensembl]
¡û
>C161034993
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1572140
1572064
-
Pro
GGG
[Ensembl]
¡û
>C161071289
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
2156926
2156850
-
Pro
GGG
[Ensembl]
¡û
>W121010810
AGJO01000001
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
74125
74201
+
Pro
GGG
[ENA]
¡û
>W1610540321
JSFG01000005
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
3700
3624
-
Pro
GGG
[ENA]
¡û
>W1710517613
FNDL01000026
Thermotogota
Fervidobacterium changbaicum [FNDL]
32522
32446
-
Pro
GGG
[ENA]
¡û
>W1710586884
FQXN01000005
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
83992
84068
+
Pro
GGG
[ENA]
¡û
>W1710593325
FRDJ01000001
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
322682
322758
+
Pro
GGG
[ENA]
¡û
>W1710643342
JSFG01000005
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
3700
3624
-
Pro
GGG
[ENA]
¡û
>W1710660953
JYCX01000004
Thermotogota
Thermosipho melanesiensis [JYCX]
249351
249427
+
Pro
GGG
[ENA]
¡û
>W1710661005
JYCY01000011
Thermotogota
Thermosipho melanesiensis [JYCY]
155631
155707
+
Pro
GGG
[ENA]
¡û
>W1710661051
JYCZ01000011
Thermotogota
Thermosipho melanesiensis [JYCZ]
155631
155707
+
Pro
GGG
[ENA]
¡û
>W1710661095
JYDA01000011
Thermotogota
Thermosipho melanesiensis [JYDA]
155631
155707
+
Pro
GGG
[ENA]
¡û
>W1710661139
JYDB01000011
Thermotogota
Thermosipho melanesiensis [JYDB]
155631
155707
+
Pro
GGG
[ENA]
¡û
>W1710701249
LBEX01000015
Thermotogota
Thermosipho sp. 1074 [LBEX]
156475
156551
+
Pro
GGG
[ENA]
¡û
>W1710701293
LBEY01000028
Thermotogota
Thermosipho sp. 1223 [LBEY]
46401
46477
+
Pro
GGG
[ENA]
¡û
>W1710701339
LBFC01000018
Thermotogota
Thermosipho affectus [LBFC]
156873
156949
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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