This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146781 (34 seq.)
>W1711170207
LWAF01000007
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
13118
13042
-
Pro
CGG
[ENA]
¡û
>C171000432
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
1378608
1378684
+
Pro
CGG
-
¡û
>C171000744
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
1364450
1364526
+
Pro
CGG
-
¡û
>C171001381
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
1257396
1257472
+
Pro
CGG
-
¡û
>C025696
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
1257290
1257366
+
Pro
CGG
[Ensembl]
¡û
>w019763
AAUK01000038
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
9200
9278
+
Pro
CGG
[ENA]
¡û
>WENV180013885
FPIC01007233
[FPIC] soil metagenome; Soil
4212
4288
+
Pro
CGG
[ENA]
¢þ
>WENV180014567
FQKF010049165
[FQKF] soil metagenome; Soil
3104
3028
-
Pro
CGG
[ENA]
¢þ
>WENV180097445
MTBK01189307
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
746
670
-
Pro
CGG
[ENA]
¢þ
>W141020302
AJIP01000022
Thermotogota
Thermosipho africanus H17ap60334 [AJIP]
44902
44826
-
Pro
CGG
[ENA]
¡û
>WENV181226226
OFDK01000264
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
1921
1997
+
Pro
CGG
[ENA]
¢þ
>WENV181285323
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
258125
258049
-
Pro
CGG
[ENA]
¢þ
>C08004996
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1201288
1201215
-
Pro
CGG
[Ensembl]
¡û
>W09106579
AAWH01000001
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
134437
134361
-
Pro
CGG
[ENA]
¡û
>W1910128988
BHXD01000001
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
72443
72367
-
Pro
CGG
[ENA]
¡û
>W1910573569
JPMH01000009
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
16008
16084
+
Pro
CGG
[ENA]
¡û
>C09110473
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
1553023
1552947
-
Pro
CGG
[Ensembl]
¡û
>W1910990277
NKRG01000003
Thermotogota
Thermosipho africanus Ob7 [NKRG]
46950
47026
+
Pro
CGG
[ENA]
¡û
>W1511355448
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1714610
1714534
-
Pro
CGG
[ENA]
¡û
>C121009907
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1427218
1427142
-
Pro
CGG
[Ensembl]
¡û
>C161034986
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
2052606
2052530
-
Pro
CGG
[Ensembl]
¡û
>C161071294
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1469921
1469845
-
Pro
CGG
[Ensembl]
¡û
>W121010818
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
178867
178943
+
Pro
CGG
[ENA]
¡û
>W1710517588
FNDL01000003
Thermotogota
Fervidobacterium changbaicum [FNDL]
78972
78896
-
Pro
CGG
[ENA]
¡û
>W1710586900
FQXN01000008
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
39367
39443
+
Pro
CGG
[ENA]
¡û
>W1710593367
FRDJ01000014
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
38510
38434
-
Pro
CGG
[ENA]
¡û
>W1710660959
JYCX01000004
Thermotogota
Thermosipho melanesiensis [JYCX]
615296
615372
+
Pro
CGG
[ENA]
¡û
>W1710661012
JYCY01000014
Thermotogota
Thermosipho melanesiensis [JYCY]
109293
109369
+
Pro
CGG
[ENA]
¡û
>W1710661058
JYCZ01000014
Thermotogota
Thermosipho melanesiensis [JYCZ]
109295
109371
+
Pro
CGG
[ENA]
¡û
>W1710661102
JYDA01000014
Thermotogota
Thermosipho melanesiensis [JYDA]
109286
109362
+
Pro
CGG
[ENA]
¡û
>W1710661146
JYDB01000014
Thermotogota
Thermosipho melanesiensis [JYDB]
109291
109367
+
Pro
CGG
[ENA]
¡û
>W1710701257
LBEX01000018
Thermotogota
Thermosipho sp. 1074 [LBEX]
41256
41332
+
Pro
CGG
[ENA]
¡û
>W1710701301
LBEY01000032
Thermotogota
Thermosipho sp. 1223 [LBEY]
41430
41506
+
Pro
CGG
[ENA]
¡û
>W1710701347
LBFC01000022
Thermotogota
Thermosipho affectus [LBFC]
41282
41358
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK